CF836016

Overview
NameCF836016
Unique NameCF836016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1144 contig Csv1_Contig1144:1011..1791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: HOG1_PICST (Mitogen-activated protein kinase HOG1 OS=Pichia stipitis GN=HOG1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = -1
Query:  472 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPH----PWHKVFQK--RLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDP 780
            GC++AE++ G+PLFPG+  V Q   I ++LG+P  + I  +    T  +F Q  PH    P+++ F +   + PEA+DL+ +   + P  R +A  A  HP+ +   DP
Sbjct:  204 GCILAEMIEGKPLFPGKDHVHQFSIITELLGSPPPDVIDTICSENT-LRFVQSLPHRDPIPFNERFAQCTHVEPEAIDLLAKMLIFDPKKRISAASALTHPYMEPYHDP 311          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: CRK1_SCHPO (Serine/threonine-protein kinase crk1 OS=Schizosaccharomyces pombe GN=crk1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 42/105 (40.00%), Postives = 53/105 (50.48%), Query Frame = -1
Query:  472 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMN--PNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDP 780
            GC+ AEL+L  P  PGES +DQL  I + LGTP  E IK M   PNY E K     P+   +        E +DL+     Y+P  R TA +A  H +F  L  P
Sbjct:  195 GCIFAELMLRTPYLPGESDLDQLNVIFRALGTPEPEVIKSMQQLPNYVEMKHIP-PPNGGMEALFSAAGHEEIDLLKMMLDYNPYRRPTAQQALEHHYFSALPKP 298          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = -1
Query:  406 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCM--NPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDPN--TRLPNGRPLPPLFNFKPPELS 780
            GC+ AELLL +P   G S +DQL +I    GTP   +   M   P+Y E++F  +   P   +F      +A+DL+ R F Y P  R TA +A  H +F  +  P   ++LP   P     N K P+L+
Sbjct:  204 GCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKSSQWPDMVYLPDYVEYQF--VSAPPLRSLF-PMASDDALDLLSRMFTYDPKARITAQQALEHRYFLSVPAPTKPSQLPRPPPKGDSGNNKIPDLN 329          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = -1
Query:  406 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCM--NPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDPN--TRLPNGRPLPPLFNFKPPELS 780
            GC+ AELLL +P   G S +DQL +I    GTP   +   M   P+Y E++F  +   P   +F      +A+DL+ R F Y P  R TA +A  H +F  +  P   ++LP   P     N K P+L+
Sbjct:  204 GCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKSSQWPDMVYLPDYVEYQF--VSAPPLRSLF-PMASDDALDLLSRMFTYDPKARITAQQALEHRYFLSVPAPTKPSQLPRPPPKGDSGNNKIPDLN 329          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: MK15_RAT (Mitogen-activated protein kinase 15 OS=Rattus norvegicus GN=Mapk15 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 35/113 (30.97%), Postives = 58/113 (51.33%), Query Frame = -1
Query:  451 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHP---WHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDPNTRLPNG 780
            GC++ E+L GQPLFPG S   QL  I++ +  P+ EE++ +  +Y+      +   P      +     PPEA+DL+ R   ++P+ R +A +A  HP+      P+     G
Sbjct:  206 GCILGEMLRGQPLFPGTSTFHQLELILETIPLPSMEELQGLGSDYSALILQNLGSRPRQTLDALLPPDTPPEALDLLKRLLAFAPDKRLSAEQALQHPYVQRFHCPDREWTRG 318          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: MK12_RAT (Mitogen-activated protein kinase 12 OS=Rattus norvegicus GN=Mapk12 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  475 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMN----PNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRD 780
            GC+MAE++ G+ LF G   +DQL EI+KV GTP  E ++ +      NY E   P+++   +  V      P+AV+L+ +        R TA EA  HP+F+ LRD
Sbjct:  213 GCIMAEMITGKILFKGNDHLDQLKEIMKVTGTPPPEFVQKLQSAEAKNYME-GLPELEKKDFASVL-TNASPQAVNLLEKMLVLDAEQRVTAAEALAHPYFESLRD 316          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: HOG1_USTMA (Mitogen-activated protein kinase HOG1 OS=Ustilago maydis GN=HOG1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  472 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCM-NPNYTEF--KFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDP 780
            GC+ AE+L G+PLFPG+  V+Q   I ++LGTP  E IK + + N   F    P+ +  P+ + F K   P A+DL+ +   + P  R +A EA  HP+     DP
Sbjct:  201 GCIFAEMLEGKPLFPGKDHVNQFSIITELLGTPPDEVIKTICSENTLRFVQSLPKRERVPFSQKF-KNADPMALDLLEKMLVFDPRTRISAAEALAHPYLAPYHDP 305          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: CPK1_CRYNE (Mitogen-activated protein kinase CPK1 OS=Cryptococcus neoformans GN=CPK1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = -1
Query:  430 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTE--FKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDELRDPNTRLPNGRPLPPLF 780
            GC++AE++ G+PLFPG     QL  I++VLGTPT ++   +    ++   +  +            +  P AVDL+ +   +SP+ R T  EA +H + +   DP+   PN  PL P F
Sbjct:  211 GCILAEMINGKPLFPGRDYHHQLSLILQVLGTPTMDDFNEITSQRSKDYLRALEFTRRQDFSAICPKAKPAAVDLLKQTLTFSPSKRITVEEALMHSYVEAYHDPHDE-PNAEPLKPGF 328          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = -1
Query:  481 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMN--PNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDEL 780
            GC+ AEL   QPLF G+S V QL+ I K+LGTP  +    ++  PN+ E  +PQ  P     +    L  +A+DL+ +  QY P+ R +A +A  HP+F+++
Sbjct:  223 GCIFAELATNQPLFAGDSEVQQLLHIFKLLGTPNEQVWPGVSKLPNWHE--YPQWNPSKVSDLVH-GLDADALDLLEKMLQYEPSKRISAKKAMEHPYFNDV 321          
BLAST of CF836016 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = -1
Query:  481 GCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACVHPFFDEL 780
            GC+ AE++  Q LFPG+S   QL+ I ++LGTPT ++   +        +P+ +P    +     L PE +DL+ +  +Y+P  R +A  A  HP+FD L
Sbjct:  208 GCIFAEMIRRQALFPGDSEFQQLLHIFRLLGTPTEQQWPGVMALRDWHVYPKWEPQDLSRAVPS-LSPEGIDLLTQMLKYNPAERISAKAALDHPYFDSL 306          
The following BLAST results are available for this feature:
BLAST of CF836016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
HOG1_PICST5.933e-1133.94Mitogen-activated protein kinase HOG1 OS=Pichia st... [more]
CRK1_SCHPO5.933e-1140.00Serine/threonine-protein kinase crk1 OS=Schizosacc... [more]
CDKD1_ORYSJ5.933e-1134.88Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSI5.933e-1134.88Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
MK15_RAT7.749e-1130.97Mitogen-activated protein kinase 15 OS=Rattus norv... [more]
MK12_RAT7.749e-1137.74Mitogen-activated protein kinase 12 OS=Rattus norv... [more]
HOG1_USTMA7.749e-1137.74Mitogen-activated protein kinase HOG1 OS=Ustilago ... [more]
CPK1_CRYNE7.749e-1132.77Mitogen-activated protein kinase CPK1 OS=Cryptococ... [more]
CKB21_ORYSJ7.749e-1138.24Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CKB12_ARATH7.749e-1135.00Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836016 ID=CF836016; Name=CF836016; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTTTAATATTTTACAGATTCTCATATTTTTCATCTCA
CTAAACTCGCCCATGAAACAGGGATACAACAAATTACATGATAAGTTAAA
AAAAAAAAAAAAATTGTCTTCATCCAAAGCCGTAACTCGTAATGACAAAT
AAACAAACTCAAAGCCTCAGTCAGGTCTCCCAAATTCTCCTAAACATTCC
TTCTGCAACACTCTTTCCTCACCGGAACTAAAGAGACAATGATAAATGAA
AAAACGGTGACGGATTTTTACAAGTGTCGATAAAACGTTCAAGATAAACT
TACGGAGGAGACTTGTAACAGATGCTAAGAGTGCAAAGCCATGAATAAGT
TCTGCTTACGAGCGTGCTCTGGGATGAGTCTGTTGATGGTTTCAGGTGGG
ATGCCCGAAAGCTCTGGAGGTTTAAAATTAAACAGGGGTGGAAGGGGGCG
ACCATTAGGAAGGCGGGTGTTTGGGTCCCTTAATTCATCAAAGAAAGGGT
GAACACAAGCTTCCAGAGCAGTGCATCGTAAGTTGGGAGAGTACTGGAAA
AATCTACAGACGAGGTCCACAGCTTCTGGGGGTAAACGCTTTTGGAAGAC
CTTGTGCCACGGATGAGGCTTTATCTGTGGGAACTTAAATTCTGTATAGT
TTGGATTCATGCACTTTATCTCCTCTCGGGTTGGTGTTCCCAAAACCTTG
ATAATCTCAACTAGTTGGTCAACTCCACTTTCACCAGGAAACAAAGGCTG
TCCAAGAAGCAACTCAGCCATCACACAACC
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