CF836017

Overview
NameCF836017
Unique NameCF836017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.043e-30
Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 3
Query:  438 KVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTD-KXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            ++SY  + V+G GSFGVVF AK   T E+VAIKKVLQDKR+KNRELQIM+ L+HPNIV LK+ F+S+ + K              TV R+AR+YS+  Q++P+IYVKLY YQ+ R+LAYIH+
Sbjct:   33 EISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGEKKDELYLNLILEYVPETVYRVARHYSKQRQQIPMIYVKLYMYQLLRSLAYIHS 154          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 80/201 (39.80%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  294 EMLEMRLRDQVDNDEDRDSEPDI-IDGVG--AETGHVIRT--------------TIGGRNGNS--------------KQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDK-XXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            E +E     Q+D + D D++ D   DG G   +T  + RT               I GR+G+                Q+VSY    V+G GSFGVVFQAK  +TGE+VAIKKVLQD+R+KNRELQIM+ L+H NIV L + F+S+ +K               TV ++AR Y++  Q +P+ +++LY YQ+ R+LAYIH+
Sbjct:  525 EDVEQGAEPQIDGEADLDADADADSDGSGENVKTAKLARTQSCVSWTKVVQKFKNILGRDGSKITTVVATPGQGTDRVQEVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQIMRKLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKTKQTIPINFIRLYMYQLFRSLAYIHS 725          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = 3
Query:  441 VSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            V YI E V+G GSFGVV QA   +T E+VAIKKVLQD+RYKNRELQIM+ML+H NIV+LK+ F+ T+D               TV R++R+YS   Q +P I+VKLY YQ+CR++ YIH+
Sbjct:   54 VCYITEGVIGNGSFGVVTQAIVADTKEVVAIKKVLQDQRYKNRELQIMKMLNHINIVSLKNSFY-TSDNDEVYLNLVLEYVPDTVYRVSRHYSMSKQPVPNIFVKLYIYQLCRSINYIHS 172          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.259e-28
Identity = 68/145 (46.90%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  372 VGAETGHVIRTTIG-GRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTD-KXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            +G ++G V       G+     Q+V+Y    V+G GSFGVV+QA+  ET E+VAIKKVLQDKR+KNRELQIM+ LDH NIV L++ F+S+ + K              TV R+AR++++    +P+IYVK+Y YQ+ R+LAYIH+
Sbjct:   93 LGRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLIIPIIYVKVYMYQLFRSLAYIHS 237          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.259e-28
Identity = 67/145 (46.21%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  372 VGAETGHVIRTTIG-GRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTD-KXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            +G ++G V       G+     Q+V+Y    V+G GSFGVV+QA+  ET E+VAIKKVLQDKR+KNRELQIM+ LDH NIV L++ F+S+ + K              TV R+AR++++    +P++YVK+Y YQ+ R+LAYIH+
Sbjct:   93 LGRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLTIPILYVKVYMYQLFRSLAYIHS 237          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.488e-28
Identity = 67/145 (46.21%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  372 VGAETGHVIRTTIG-GRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTD-KXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            +G ++G V       G+     Q+V+Y    V+G GSFGVV+QA+  ET E+VAIKKVLQDKR+KNRELQIM+ LDH NIV L++ F+S+ + K              TV R+AR++++     P+IY+K+Y YQ+ R+LAYIH+
Sbjct:   93 LGRDSGKVTTVVATVGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDELYLNLVLEYVPETVYRVARHFTKAKLITPIIYIKVYMYQLFRSLAYIHS 237          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-24
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  438 KVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDK-XXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            ++SY    VVG GSFGVVFQAK   + E+VAIKKVLQD+R+KNRELQIM+ L H NI+ LK  FFS+ +K               T+ ++ R Y+R  Q +P+ +V+LY YQ+ R++ Y+H+
Sbjct:   30 EISYTDAKVVGNGSFGVVFQAKMVPSNEMVAIKKVLQDRRFKNRELQIMRKLRHDNIITLKWFFFSSGEKRDEVYLNLVMEFLPETLYKVERQYARAKQTLPVNFVRLYMYQLLRSMGYLHS 151          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  402 TTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTD-KXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIH 797
            T   G  G  KQ +SY +  VVG+GSFGVV Q    E+    AIK+VLQDKR+KNRELQIM+++ HPNIV L   +++T D                T+ R +R Y+R    MP++ VKLY YQ+ R+LAYIH
Sbjct:   18 TARDGSTGEVKQ-LSYTSSKVVGSGSFGVVMQVHLIESDSKAAIKRVLQDKRFKNRELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNLVLEFMPETIYRASRLYTRQKLSMPMLEVKLYIYQLLRSLAYIH 149          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: MRK1_YEAST (Serine/threonine-protein kinase MRK1 OS=Saccharomyces cerevisiae GN=MRK1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  390 HVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            H  +T +  +N      +SY    VVG GSFGVV      ET + VAIKKVLQD+RYKNREL+ M+ML HPN V L++ F+   ++              ++ +  R++  +  +MP + +K Y YQ+ +AL Y+HN
Sbjct:  145 HDRKTDVDRKNHGGTIDISYPTTEVVGHGSFGVVVTTVIIETNQKVAIKKVLQDRRYKNRELETMKMLCHPNTVGLQYYFYEKDEEDEVYLNLVLDYMPQSLYQRLRHFVNLKMQMPRVEIKFYAYQLFKALNYLHN 281          
BLAST of CF836017 vs. ExPASy Swiss-Prot
Match: GSK31_SCHPO (Protein kinase gsk31 OS=Schizosaccharomyces pombe GN=gsk31 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.269e-20
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  378 AETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFST--TDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPLIYVKLYTYQICRALAYIHN 800
            ++  H+    +       K+ +SY    V+G+GSFGVV QAK   T   +A+K+VLQDKRYKNRELQIM+ + HPNI+ L   FF T    K              TV    R Y+R  + +P + +KLY +Q+ RALAY+H+
Sbjct:    2 SDDSHLETKVVTDGTTGEKKTISYEPCRVLGSGSFGVVIQAKLVGTPGFIAVKRVLQDKRYKNRELQIMRAISHPNIIKL-IAFFHTHNPSKDETHLCLLLEYMPETVFDDMRWYTRRRKSIPNLSIKLYAFQLFRALAYLHS 143          
The following BLAST results are available for this feature:
BLAST of CF836017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GSK3_CAEEL2.043e-3055.74Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
SGG_DROME2.497e-2839.80Protein kinase shaggy OS=Drosophila melanogaster G... [more]
GSK3_DICDI2.497e-2855.00Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3A_RAT4.259e-2846.90Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
GSK3A_HUMAN4.259e-2846.21Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]
GSK3A_MOUSE9.488e-2846.21Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3H_DROME1.675e-2447.54Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
GSK3_SCHPO9.190e-2346.62Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
MRK1_YEAST2.264e-2138.69Serine/threonine-protein kinase MRK1 OS=Saccharomy... [more]
GSK31_SCHPO3.269e-2040.56Protein kinase gsk31 OS=Schizosaccharomyces pombe ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836017 ID=CF836017; Name=CF836017; organism=Citrus sinensis; type=EST; length=801bp
TTTAATTGCTTCCATTTTCATCTCATAAGCGTTCAAATTTTGTGAAGCTG
AAAGCTGCAGAATGCGTGGAATTTGCTTCCACTTCTCGTTCAAGCGCTTC
CAGGAAGATAGGTGTTTGGGTGGTACAGAAGGCACGACCTCAGAGCATCT
GGAGGGTAGCGAATACTAGTATCTGGAATACTCTCGAGTTTGTATAAATG
GCATCTGCCAGCCTAGGGAATGGGGGAGTGGGCAGTTCCAGGTCTGTTAA
CGGCTTCAAGAGTTCATCAAGTTCGGTTGACTGGTTGGGGAGAGAAATGC
TTGAAATGAGATTGCGGGACCAGGTGGACAATGATGAAGACAGAGATAGT
GAACCAGATATCATTGATGGTGTGGGTGCTGAAACTGGACACGTCATACG
AACAACGATTGGTGGTCGAAATGGCAATTCTAAGCAGAAAGTTAGTTATA
TAGCTGAGCATGTGGTTGGAACTGGTTCTTTTGGTGTTGTCTTTCAAGCA
AAATGTAGAGAAACTGGAGAGATTGTTGCTATCAAGAAGGTTCTCCAAGA
CAAGCGCTATAAGAATAGGGAGTTACAGATTATGCAGATGTTGGACCATC
CAAATATTGTTGCCCTTAAGCATTGTTTCTTTTCAACAACAGACAAGGAA
GAGCTTTACTTGAATCTTGTGCTTGAATATGTTCCTGAAACCGTTAATCG
AATTGCAAGGAACTACAGCAGGATCCACCAGCGGATGCCCTTAATATATG
TTAAACTCTATACCTATCAGATCTGTAGGGCACTTGCTTATATACATAAT
T
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