CF836032

Overview
NameCF836032
Unique NameCF836032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836032 vs. ExPASy Swiss-Prot
Match: SCP19_ARATH (Serine carboxypeptidase-like 19 OS=Arabidopsis thaliana GN=SCPL19 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 64/221 (28.96%), Postives = 99/221 (44.80%), Query Frame = 3
Query:   21 GLISDDTYKQLNLLCDYESF-VHPSSS-CDKVLDVADNELGNIDQYSIFTPSC--------TASVSQSNRLLKRMHVVGHPSEKYDPCTEKH----SVVYFNQPEVQKALHVIPAVAPAKWETCSGVVNNNWLDSPRTVLDIYRELIH------SGLRIWMFSGDTDAVIPVTSTRYSIDALNLPTVKPWRAW-YDEGQVGGWTQEYSG-LTFVTVRGAGH 617
            GLISD+ ++ L   C  + F V PS++ C   L   D+ +  I    I   +C        T ++    R + +   V   S    P    +    S  + N   V++AL V   V   KW  C      N  + P T  +I+  + +       G R  ++SGD D+++P +ST+  I ALN   V  WR W     QV G+T+ Y+  +TF T++G GH
Sbjct:  232 GLISDELFESLERSCGGKFFNVDPSNARCSNNLQAYDHCMSEIYSEHILLRNCKVDYVLADTPNIRTDRRRVMKEFSVNDSSSLPPPSCFTYRYFLSAFWANDENVRRALGVKKEVG--KWNRC------NSQNIPYT-FEIFNAVPYHVNNSLKGFRSLIYSGDHDSMVPFSSTQAWIRALNYSIVDDWRPWMMSSNQVAGYTRTYANKMTFATIKGGGH 443          
BLAST of CF836032 vs. ExPASy Swiss-Prot
Match: SCP3_ARATH (Serine carboxypeptidase-like 3 OS=Arabidopsis thaliana GN=SCPL3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 55/225 (24.44%), Postives = 101/225 (44.89%), Query Frame = 3
Query:   24 LISDDTYKQLNLLC--DYESFVHP-SSSCDKVLDVADNELGNIDQYSIFTPSCTASVSQSNRLLKRMHVVGHPSEKYDPCTEKHSVVYFNQPEVQKALHVIPAVAPAKWETCSGVVNNNWLDSPRTVLDIYRELIHSGLRIWMFSGDTDAVIPVTSTRYSIDALNLPTVKPWRAWYDEGQVGGWTQEYSG-LTFVTVRGAGHEVPLHRPKPALTLIKSFLSXRSM 686
            LISD+ ++ L   C  DY + VHP ++ C K ++  +    +I Q  I  P C       N  + R  +  +               + N   V+KAL +       +W  C   +  N+    ++ +  +     +G R  ++SGD D  +P   T+  I +LN   +  WR W  + Q+ G+T+ Y+  +TF T+RG GH +   +P+ A  + + ++  + +
Sbjct:  239 LISDELFESLKKTCKGDYRN-VHPRNTECLKFIEEFNKCTNSICQRRIIDPFCETETP--NCYIYRFLLAAY---------------WANDETVRKALQIKKETI-GEWVRCHYGIPYNY--DIKSSIPYHMNNSINGYRSLIYSGDHDFEVPFLGTQAWIRSLNYSVIDDWRPWMIKDQIAGYTRTYANKMTFATIRGGGHTIEF-KPEEASIMFQRWIKGQPL 441          
BLAST of CF836032 vs. ExPASy Swiss-Prot
Match: SCP14_ARATH (Serine carboxypeptidase-like 14 OS=Arabidopsis thaliana GN=SCPL14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 61/232 (26.29%), Postives = 100/232 (43.10%), Query Frame = 3
Query:    6 FWWSAGLISDDTYKQLNLLCDYE-SFVHP-SSSCDKVLDVADNELGNIDQYSIFTPSCTASVSQSNRLLKRMHVVGHPSEKYDPCTEKH--SVVYFNQPEVQKALHVIPAVAPAKWETCSGVVNNNWLDSPRTVLDIYRELIHSGLRIWMFSGDTDAVIPVTSTRYSIDALNLPTVKPWRAWYDEGQVGGWTQEYSG-LTFVTVRGAGHEVPLHRPKPALTLIKSFLSXRSM 686
            F     LISD+ ++ L   C    S V P ++ C K++      +  I Q  I  P C  +                     D  T ++  S+ + N   V++AL V+   +  KWE C   V +N     ++ +  +      G R  + SGD D  IP   T+  I +LN    + WR W    QV G+T+ Y+  +T  TV+G GH +  ++P+    L K ++S + +
Sbjct:  227 FAHGVALISDELFESLKRSCGGSYSIVDPLNTECLKLIKDYHKCVSGIYQELILKPKCETTSP-------------------DCYTYRYLLSIYWANNEIVRRALKVVEG-SKGKWERCDLSVRSN--QDIKSSIPYHMNNSIKGYRSLVISGDHDMTIPFLGTQAWIRSLNYSITEKWRPWMILDQVAGYTKTYANKMTLATVKGGGHTLE-YKPEENSILFKRWISGQPL 435          
The following BLAST results are available for this feature:
BLAST of CF836032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SCP19_ARATH8.368e-1228.96Serine carboxypeptidase-like 19 OS=Arabidopsis tha... [more]
SCP3_ARATH7.084e-1124.44Serine carboxypeptidase-like 3 OS=Arabidopsis thal... [more]
SCP14_ARATH7.084e-1126.29Serine carboxypeptidase-like 14 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836032 ID=CF836032; Name=CF836032; organism=Citrus sinensis; type=EST; length=741bp
TCCAGTTTTGGTGGTCAGCTGGTTTGATATCTGATGATACGTACAAGCAA
CTAAACCTTCTATGTGATTATGAGTCCTTTGTCCACCCCTCCAGTTCTTG
TGATAAGGTCCTAGATGTTGCTGATAATGAACTTGGAAACATTGACCAAT
ACAGTATTTTCACCCCTTCCTGCACTGCCAGTGTTAGCCAGTCAAATCGG
CTGCTTAAAAGAATGCATGTTGTTGGTCACCCCAGCGAGAAGTATGATCC
TTGCACTGAGAAGCACTCAGTTGTGTACTTCAATCAACCTGAGGTTCAAA
AGGCTCTCCATGTTATTCCAGCAGTTGCACCGGCAAAATGGGAGACTTGC
AGTGGTGTGGTAAATAATAACTGGCTGGATTCTCCTAGGACAGTGCTGGA
CATTTATCGTGAGCTTATACATTCTGGACTTCGTATATGGATGTTCAGTG
GTGATACAGATGCTGTGATCCCAGTTACGTCCACCCGTTACAGCATAGAT
GCTCTTAATCTTCCAACAGTGAAGCCCTGGCGTGCCTGGTATGACGAGGG
GCAGGTGGGAGGATGGACCCAAGAGTATTCTGGACTTACCTTTGTCACCG
TGAGGGGAGCAGGCCACGAAGTCCCATTGCATAGACCCAAACCTGCTCTC
ACACTAATCAAAAGCTTTCTATCANGAAGGTCAATGCCATGCTTGAAACG
AGTCAGCCACAGTGACTCATGAAGCTTGCATTCTCACTTGA
back to top