CF836037

Overview
NameCF836037
Unique NameCF836037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 71/260 (27.31%), Postives = 118/260 (45.38%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD-----------------------------IKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y   A+ ++P  ++ Y   G+  + TL+ N    + +  R R+L+D+S++D    + G  ++MP ++AP     M    GE          G   TLS+ +   +EEV++      +FQLYV KDR     +++RA+ AG   +  TVD P  G R  D                             IK +    PH TL N    Y GK    DD     ++    D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSANDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRDRHSGMSGDYKEIRRALQAVTHPFWAWDVGIKGK----PH-TLGNVSA-YTGKAVGLDD--YVVWLGENFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 73/249 (29.32%), Postives = 119/249 (47.79%), Query Frame = 3
Query:   60 AKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVD----------TPRLGRR-----------EADIKNRF-------VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            AK +LPK VY    + +E   T+ +N  AFS + F P ++    K D++TTV+G  +S+P++I+PT  Q +  P GE          GT+M LSS+A+  +EEV +  P   FFQ+Y    R+  A+ V+RA +AG   + +T D          +P++              EA  + R+       + PP L + N      G+  +      A+Y          W+D+ WL+ +   P ++KGV+
Sbjct:   16 AKRRLPKSVYSSLIAASEKGITVADNVAAFSELGFAPHVIGATDKRDLSTTVMGQEVSLPVIISPTGVQAV-DPGGEVAVARAAAARGTVMGLSSFASKPIEEVIAANPK-TFFQVYWQGGRDALAERVERARQAGAVGLVVTTDWTFSHGRDWGSPKIPEEMNLKTILRLSPEAITRPRWLWKFAKTLRPPDLRVPNQ-----GRRGEPGPPFFAAYGEWMATPPPTWEDIGWLRELWGGPFMLKGVM 257          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 68/253 (26.88%), Postives = 115/253 (45.45%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY--------IGKMDKTDDSG-LASYVANQI-------------DRSLNWKDVKWLQTITSLPILVKGVL 722
            I +  +Y   AK +LP  ++ Y   GA  + TL+ N +    +  R RILR V  +D++  +    + +PI++AP     M    GE          G   TLSS +   + EV     G  +FQLYV KDR      ++RA  +G + +  TVD P  G R  D  +  +  P+  L+ +   +        +G M +  D G +++Y+  +I             D S+ W D++W++      +++KG+L
Sbjct:    3 IASTFDYRKAAKRRLPPFLFHYIDGGAYAEETLRRNCSDLQALALRQRILRQVGGVDLSIKLFEQRLDLPIVLAPVGLTGMYARRGEVQAAHAATAKGIPFTLSSVSVCPIAEVQEAVGGGFWFQLYVLKDRGFMRDALERAWASGVRTLVFTVDMPIPGARYRDAHSG-MSGPYAGLRRFLQAFTHPHWAWNVGIMGRPHDLGNVSTYLEKKIALDDYVGWLGANFDPSIGWHDLQWIRDFWKGKMILKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 70/259 (27.03%), Postives = 119/259 (45.95%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV-SSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKN-------------RFVLPPHLTLKNYEGLYIGKMDKTDDSG-LASYVANQI-------------DRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y   AK +LP  ++ Y   GA  + T++ N      +  R RILR V ++D++  +    +++PI++AP     M    GE          G   TLSS +  S+ EV +  G G  +FQLYV KDR     +++R+  AG + +  TVD P  G R  D  +             + V+ PH          +G M +  D G +++Y+  +I             D S+ W D++W++      +++KG+L
Sbjct:    3 ISSTFDYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRQVGEVDLSIKLFDQRLNLPIVLAPVGLTGMYARRGEVKAARAAVAKGIPFTLSSVSVCSLAEVHAEVGSGF-WFQLYVLKDRGFMRDVLERSWLAGVRTLVFTVDMPVPGARYRDAHSGMSGPYAGLRRILQAVVHPHWAWN------VGIMGRPHDLGNVSTYLQKKITLEDYVGWLGANFDPSIGWSDLQWIRDFWKGKMILKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_BARHE (L-lactate dehydrogenase [cytochrome] OS=Bartonella henselae GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 69/256 (26.95%), Postives = 112/256 (43.75%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD--------------IKNRFVLP-----------PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++ ++Y   AK +LP  ++ Y   GA  + T++ N      +  R RILR V ++D++T +    + +PI++AP     M    GE          G   TLSS +   + EV        +FQLYV KDR     +++R+  +G + +  TVD P  G R  D              I   F+ P           PH  L N    Y+ K    DD     ++    D S+ W D++W++      +++KG+L
Sbjct:    3 ISSTLDYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRGVGEVDLSTKLFDQTLDLPIILAPVGLTGMYARRGEVQAARAAVAKGIPFTLSSVSVCPIAEVQKAVGSAFWFQLYVLKDRGFMRDVLERSWASGVRTLVFTVDMPVPGARYRDAHSGMSGSYAGLRRILQAFIHPHWAWNVGIMGRPH-DLGNV-STYLQKKIALDD--YIGWLGANFDPSIGWHDLQWIRDFWKGKMILKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 63/241 (26.14%), Postives = 112/241 (46.47%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEG--ECXXXXXXXXXGTIMTLSSWATSSVEEVSS-TGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIK-NRFVLPPHLTLKNYEGLYIGKMDKTDDSGL------------ASYVANQIDRSLNWKDVKWLQTITSLPILVKGV 719
            ++ A A++ LP  V  Y A G+ D+ T + N  AF      PR+L   ++ D++  + G   + P+  AP     +   +G  +          G     S+ A SS+E++    G    +FQLY  +DR++    ++RAE AG+  + +T+DT   G R  D+  + F     L L NY    + +      SG+            A +       S+ W+D+ W+++IT +P+++KG+
Sbjct:   29 DWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLYYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRDLTISNFPFLRGLCLTNYVTDPVFQKKFKAHSGVEAEGLRDNPRLAADFWHGLFGHSVTWEDIDWVRSITKMPVILKGI 269          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 64/244 (26.23%), Postives = 113/244 (46.31%), Query Frame = 3
Query:   48 YHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV-SSTGPGIRFFQLYVTKD--RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKN---RFVLPPHL-------------TLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +  LA E++ K    Y    A  + T  +N  +F +    P  L      D++TTV G     PI +AP   QK+ +PEGE               +S+ + +S E++  ++GPG R++QLY   +  +++   L+ RA++ G + + +T+DT  LG R +D+ N    F+ P  +               K   G+ + +         A  V   I  S +W+D+K+L+     PI++KG++
Sbjct:   39 WEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFRKQFKEKHGVEVEENMLEAAKEFAGIVFPGI--SHDWEDLKFLRKHWDGPIVLKGIM 280          
The following BLAST results are available for this feature:
BLAST of CF836037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ACTP22.477e-2127.31L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD1_MYCTU9.414e-2129.32Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]
LLDD_BART13.577e-2026.88L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_BARQU7.969e-2027.03L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_BARHE7.969e-2026.95L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LA2M_MYCSM7.459e-1826.14Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
YKN3_SCHPO1.456e-1326.23Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836037 ID=CF836037; Name=CF836037; organism=Citrus sinensis; type=EST; length=724bp
GCGATAGCCTCTTTAATTATATATCGGAGATCACCAATGTTATGGAGTAT
CACGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTATGC
ATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCATTCT
CTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATTGAC
ATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGATTGC
TCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAACAG
CAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGGGCC
ACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTTTTT
CCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAAAAA
GAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACTCCA
AGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCCGCC
ACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGGATA
AGACTGATGACTCTGGATTAGCTTCGTATGTTGCCAACCAAATTGACCGG
TCACTGAACTGGAAGGATGTGAAGTGGCTTCAAACAATCACCTCACTGCC
AATACTCGTGAAGGGTGTTCTTAC
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