CF836037

Overview
NameCF836037
Unique NameCF836037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 71/252 (28.17%), Postives = 120/252 (47.62%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+ +LP  ++ Y   GA  + TL+ N +  + I  R R+LR++S + ++T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G + K  D           +GL  Y+   A   D S++WKD++W++   + P+++KG+L
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYMDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNAPLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 70/247 (28.34%), Postives = 113/247 (45.75%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +Y A A+ KLP  ++ Y   GA  + TL+ N    + I  R RILR++S + + T++ G  ++MP+++ P     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG K +  TVD P  G R  D  +    P     +  + +        +G   K  D G  S              ++    D S++WKD+ W++     P+++KG+L
Sbjct:    8 DYRAAAQAKLPPFLFHYIDGGAYAEHTLRRNTEDLAGIALRQRILRNMSDLSLETSLFGEKLAMPVILGPVGLTGMYARRGEVQAAKAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAVRRMLQAVTHPQWAWDVGLCGKPHDLGNVSAYRGKPTSLEDYIGWLGTNFDPSISWKDLDWIREFWQGPMIIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPK (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain KT2440) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 73/247 (29.55%), Postives = 119/247 (48.18%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI------KNRFVLPPHLTLKNYEGLY-IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +Y A A+ KLP  ++ Y   GA  + TL+ N +  + I  R R+L ++S++ + T +    +SMP+ +AP     M    GE          G   T+S+ +   +EEV+       +FQLYV KDR      ++RA+ AG K +  TVD P  G R  D       KN  +      + + E  + +G M +  D           +GLA Y+    N  D S++WKD++W++     P+++KG+L
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLNNMSELSLETKLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAINRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKNGPLRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREFWDGPMIIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 73/247 (29.55%), Postives = 119/247 (48.18%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADI------KNRFVLPPHLTLKNYEGLY-IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +Y A A+ KLP  ++ Y   GA  + TL+ N +  + I  R R+L ++S++ + T +    +SMP+ +AP     M    GE          G   T+S+ +   +EEV+       +FQLYV KDR      ++RA+ AG K +  TVD P  G R  D       KN  +      + + E  + +G M +  D           +GLA Y+    N  D S++WKD++W++     P+++KG+L
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLNNMSELSLETKLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAINRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGKNGPLRRVLQAMTHPEWAWDVGVMGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREFWDGPMIIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL6 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6 GN=lldD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 71/255 (27.84%), Postives = 118/255 (46.27%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ + P     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL5 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 71/255 (27.84%), Postives = 118/255 (46.27%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ + P     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ECO81 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O81 (strain ED1a) GN=lldD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 71/255 (27.84%), Postives = 118/255 (46.27%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ + P     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ECO7I (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 71/255 (27.84%), Postives = 118/255 (46.27%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ + P     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACIAD (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter sp. (strain ADP1) GN=lldD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 70/255 (27.45%), Postives = 120/255 (47.06%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y   AK +LP  ++ Y   GA  ++TL+ N    S+I  R R+L D+S + + T +    +SMP+ ++P     M    GE          G   T+S+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D    S++ +  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSSNDYREAAKRRLPPFLFHYIDGGAYAEYTLKRNVEDLSQIALRQRVLNDMSSLSLETKLFNETLSMPVALSPVGLTGMYARRGEVQAAVAADKKGIPFTMSTVSVCPIEEVTPAIKRPMWFQLYVLRDRGFMKNALERAKAAGCSTLVFTVDMPVPGARYRDAHSG-MSGPNAAMRRYLQSMMHPQWAWDVGLLGRPHDLGNISKYLGKTTGLED--YISWLGSNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 69/247 (27.94%), Postives = 118/247 (47.77%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +Y A AK KLP  ++ Y   G+  + TL+ N +  + I  R R+L D+S++ + T + G  +++PI ++P     M    GE          G   TLS+ +   +EEV+ +     +FQLYV KDR     +++RA+ AG K +  TVD P  G R  D+ +    P     +  + +        +G + K  D G  S              ++    D S++WKD++W++     P+++KG+L
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIHRPIWFQLYVLKDRGFMKNVLERAKAAGVKNLVFTVDMPVPGARYRDMHSGMSGPNAAMRRVLQAMAHPSWAWDVGLLGKPHDLGNISKYRGSPTKLEDYIGWLGANFDPSISWKDLEWIRDFWDGPMIIKGIL 254          
The following BLAST results are available for this feature:
BLAST of CF836037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANCB9.097e-2428.17L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_SERP51.188e-2328.34L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_PSEPK1.188e-2329.55L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEP11.188e-2329.55L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ECOL61.552e-2327.84L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOL51.552e-2327.84L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO811.552e-2327.84L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO7I1.552e-2327.84L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ACIAD1.552e-2327.45L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_VIBCM2.027e-2327.94L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836037 ID=CF836037; Name=CF836037; organism=Citrus sinensis; type=EST; length=724bp
GCGATAGCCTCTTTAATTATATATCGGAGATCACCAATGTTATGGAGTAT
CACGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTATGC
ATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCATTCT
CTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATTGAC
ATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGATTGC
TCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAACAG
CAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGGGCC
ACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTTTTT
CCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAAAAA
GAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACTCCA
AGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCCGCC
ACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGGATA
AGACTGATGACTCTGGATTAGCTTCGTATGTTGCCAACCAAATTGACCGG
TCACTGAACTGGAAGGATGTGAAGTGGCTTCAAACAATCACCTCACTGCC
AATACTCGTGAAGGGTGTTCTTAC
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