CF836039

Overview
NameCF836039
Unique NameCF836039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_DEIRA (Chaperone protein dnaJ OS=Deinococcus radiodurans GN=dnaJ PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE+LG+   A+  EIK+AYRKLA  LHPD   +++ E +A KF ++ EAY  LSD +KRA YDR
Sbjct:    4 YELLGVSRTASADEIKSAYRKLALKLHPD---RNKEEGAAEKFAQVSEAYSVLSDTEKRAHYDR 64          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BREBN (Chaperone protein dnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  236 LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            LYE+LG+   A   EIK AYRKLAR  HPDV  ++  E    KF ++ +AY+ LS+P+KRA YDR
Sbjct:    5 LYEVLGVAKDADADEIKKAYRKLARQYHPDVNKEADAEE---KFKEVKDAYDILSEPQKRAQYDR 66          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACST (Chaperone protein dnaJ OS=Bacillus stearothermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YEILG+   AT +EIK AYRKL++  HPDV   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDV---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILO (Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YE LG+Q GA  +E+K+A+RKLA   HPD      + +  +KF +++EAYETL DP+KRA YDR
Sbjct:    6 YETLGVQKGADEKELKSAFRKLAMQFHPD--RNPGDHSCEHKFKEINEAYETLKDPQKRAAYDR 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YEILG+   AT +EIK AYRKL++  HPD+   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDI---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YEILG+   AT  EIK AYRKL++  HPDV   ++  ++A KF ++ EAYE LSD +KRA YDR
Sbjct:    7 YEILGVSKNATKDEIKKAYRKLSKQYHPDV---NKAPDAAEKFKEIKEAYEVLSDDEKRARYDR 67          
BLAST of CF836039 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  239 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 430
            YEILG+   AT +EIK AYRKL++  HPD+   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDI---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
The following BLAST results are available for this feature:
BLAST of CF836039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DNAJ_DEIRA7.406e-1153.13Chaperone protein dnaJ OS=Deinococcus radiodurans ... [more]
DNAJ_BREBN7.406e-1152.31Chaperone protein dnaJ OS=Brevibacillus brevis (st... [more]
DNAJ_BACST7.406e-1153.13Chaperone protein dnaJ OS=Bacillus stearothermophi... [more]
DNAJ_RHILO9.673e-1151.56Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ P... [more]
DNAJ_GEOSW9.673e-1151.56Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_GEOKA9.673e-1154.69Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]
DNAJ_BACTR9.673e-1151.56Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836039 ID=CF836039; Name=CF836039; organism=Citrus sinensis; type=EST; length=759bp
TCAAAACAAAACACAAGAAGTAATCTAATCATCGATTCAATCCATCATGT
CTACTCTTGCATCTTCAGCCCATCTGATTGGCCCGGGATTTATCACCAAC
GAGACTCATTCACAATCACAGCCCACGTCTGTCAAATTCCGCCCCCGCCC
ACTTCGCGTATCGGCATCGGCTTGCGCCTCAACGGCGGAGAGAACAAGAA
CCCATCATCACATTACTTCTCCTGGACCCGGCTCACTCTACGAAATCCTG
GGGATTCAGACGGGTGCCACGTGTCAGGAAATCAAGACTGCTTATCGGAA
ATTAGCAAGAGTTTTGCACCCGGATGTTGCCGCTAAGAGTCAAAATGAGA
ATTCAGCATATAAGTTCATGAAATTACACGAAGCTTACGAAACTCTATCT
GATCCCAAGAAGCGTGCGGACTACGATCGTACCCTTTTCAGGCGAAGAAG
GCCATCGGGTTCCCCATTTGCGGTCTCGGGAGTGGCAAATACGATGGCCA
CTTCGTCGAATTCAAGATTTTGTGCCTACTCAAGGCGGACATGGGAGACT
GATCAGTGCTGGTAGAAAATAAAATACATAGCTGCAACTGCAAGATTATG
TTATATGATCTTAGCTGTTCAGGAATTAGGATTAGAGATGCTGCCCTTTA
ACGTCTGGGGATTAATGCTAACGCGTGTAGCTATTTATGATTGTAATTGA
AATTTGTTAATCCAGGCGGCATTTTTACAGCCTGCAATTGCAATGGGTAC
AATGTAAAA
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