CF836045

Overview
NameCF836045
Unique NameCF836045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL2_ARATH (Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.279e-30
Identity = 72/163 (44.17%), Postives = 99/163 (60.74%), Query Frame = 2
Query:   92 DFTEFEQEAIPNVDA--VDESSSRT----KGNFSVDLKLGQVNSSAED--SLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 556
            +FT    E++P   A  +D S S       G+  + LKLG+  +  ED   +   K  G     + S     K++++     QT  C V+GC+ DLS+ +DYHR+H++CE HSK P+V++ G ++RFCQQCSRFHCL EFDE KRSCR+RL  HN RRRKP P
Sbjct:   84 NFTSETGESLPGEFAKGIDTSPSLELSFGSGDPVLGLKLGK-RTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 245          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSJ (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.589e-30
Identity = 62/122 (50.82%), Postives = 75/122 (61.48%), Query Frame = 2
Query:  242 GASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGAS 607
            G+    S    G      +   G     C VD C +DL+N +DYHRRHKVCE+H KT + L+  Q QRFCQQCSRFH L EFDEGKRSCR+RL GHNRRRRK QP  ++       N + A+
Sbjct:  159 GSPGSASGGGGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPTDVASQLLLPGNQENAA 280          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSI (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.589e-30
Identity = 62/122 (50.82%), Postives = 75/122 (61.48%), Query Frame = 2
Query:  242 GASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGAS 607
            G+    S    G      +   G     C VD C +DL+N +DYHRRHKVCE+H KT + L+  Q QRFCQQCSRFH L EFDEGKRSCR+RL GHNRRRRK QP  ++       N + A+
Sbjct:  159 GSPGSASGGGGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPTDVASQLLLPGNQENAA 280          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL6_ARATH (Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:  284 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP 550
            K++RA+N  SQ   C V GC  DLS+ +DYH+RH+VCE HSKT  V++ G +QRFCQQCSRFH L EFD+GKRSCR+RL GHN RRRKP
Sbjct:  110 KKSRASNLCSQNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKP 198          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL10_ARATH (Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 69/175 (39.43%), Postives = 97/175 (55.43%), Query Frame = 2
Query:  182 LKLGQVNSSAEDSLNKCKEPGASKMESPSPSG-SFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFSSSHMYPSATVVKPTWTGV-VNTEADAR 700
            LKLG+   S E       +  A  M   +PS  + K+ ++     Q   C +DGC+ DLS+ +DYHR+H+VCE HSK P+V++ G ++RFCQQCSRFH + EFDE KRSCRKRL  HN RRRKPQ                  + P +S  ++         W G+ +NT ++ +
Sbjct:  127 LKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ-----------------GVFPLNSERVFDRRQHTSMLWNGLSLNTRSEEK 284          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSJ (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  269 PSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLS 568
            PS   K+ + +   +Q++ C V+GC  DLS+ R+YHR+HKVCE HSK P+V++ G ++RFCQQCSRFH L EFD+ K+SCR+RL  HN RRRKPQ + +S
Sbjct:  161 PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAIS 260          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSI (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  269 PSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLS 568
            PS   K+ + +   +Q++ C V+GC  DLS+ R+YHR+HKVCE HSK P+V++ G ++RFCQQCSRFH L EFD+ K+SCR+RL  HN RRRKPQ + +S
Sbjct:  161 PSTVVKKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQEAIS 260          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL11_ARATH (Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 67/151 (44.37%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  101 EFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQ 553
            +F Q   P    V  +S+ +     + LKLG+   S E       E  A  M+  +PS    +++          C +DGC+ DLS+ + YHR+HKVCE HSK P+V + G ++RFCQQCSRFH + EFDE KRSCRKRL  HN RRRKPQ
Sbjct:  104 DFVQVKAPTALEVSVASAES----DLCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 250          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL9_ARATH (Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 70/142 (49.30%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  149 SSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGS--QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLS 568
            SS    +FS  L  GQ     ED        G     S S   S +R R   +G   Q   C V+GC  DL+N + Y+ RH+VC +HSKTP+V + G +QRFCQQCSRFH L EFD  KRSCR+RL GHN RRRKPQP  LS
Sbjct:   21 SSTESSSFSGGLMFGQ-KIYFEDG-------GGGSGSSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQPASLS 154          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  284 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            K+ R         +C V+GC +DL+  RDYHRRHKVCE+H+K    ++    QRFCQQCSRFH L+EFDEGKRSCR+RL GHNRRRRK +P+
Sbjct:  138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRPE 229          
The following BLAST results are available for this feature:
BLAST of CF836045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL2_ARATH4.279e-3044.17Squamosa promoter-binding-like protein 2 OS=Arabid... [more]
SPL15_ORYSJ5.589e-3050.82Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL15_ORYSI5.589e-3050.82Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL6_ARATH1.245e-2965.17Squamosa promoter-binding-like protein 6 OS=Arabid... [more]
SPL10_ARATH1.245e-2939.43Squamosa promoter-binding-like protein 10 OS=Arabi... [more]
SPL12_ORYSJ2.124e-2955.00Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL12_ORYSI2.124e-2955.00Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL11_ARATH8.070e-2944.37Squamosa promoter-binding-like protein 11 OS=Arabi... [more]
SPL9_ARATH1.377e-2849.30Squamosa promoter-binding-like protein 9 OS=Arabid... [more]
SPL6_ORYSJ4.005e-2858.70Squamosa promoter-binding-like protein 6 OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836045 ID=CF836045; Name=CF836045; organism=Citrus sinensis; type=EST; length=774bp
GTTTGAGAAGGCGTTTAGGGAATTAATTAAAGAATAAAGTCCAACTCTTC
AACTGTTGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACT
GAATTTGAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAG
TAGCAGGACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTA
ATAGTTCGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCA
AAAATGGAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGC
TAACAATGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGG
ACCTTAGTAATTGTAGGGATTACCATAGGCGCCATAAGGTGTGTGAGCTC
CACTCGAAGACGCCTCAGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTG
TCAGCAATGCAGCAGATTTCATTGCCTGGAGGAGTTTGATGAAGGGAAGA
GAAGCTGCAGGAAACGTCTTGATGGGCACAACAGAAGACGAAGGAAACCT
CAGCCAGATCAGCTGTCACGTACTGGAACCTTTTTGTCCAATTACCAAGG
TGCCTCATTATTACCTTTCTCCAGTTCACATATGTATCCGTCCGCAACTG
TGGTGAAACCCACCTGGACTGGAGTTGTTAATACTGAAGCAGATGCAAGG
TGCTACAACGAGCATCATCGTCTAAACTTGCCTGACGAACGGAACCTATT
TTTCCGATCCCCTTCAAGCAGCTA
back to top