CF836045

Overview
NameCF836045
Unique NameCF836045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL14_ORYSJ (Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica GN=SPL14 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 66/164 (40.24%), Postives = 90/164 (54.88%), Query Frame = 2
Query:  191 GQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNY-QGASLLPFSSSHMYPSA-TVVKPTWTGV 676
            G  ++SA    +  K  G  +       G    A A         C V+GC +DLS  ++Y+ RHKVC +HSK P+V++ G +QRFCQQCSRFH L EFD+GKRSCR+RL GHN RRR+PQ    SR G   ++  +      F+    YP   + V+  W  +
Sbjct:   59 GSGSASAAPPSSSSKAAGGGRGGGGKNKGKGVAAAAPPPPPPPPRCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQTPLASRYGRLAASVGEHRRFRSFTLDFSYPRVPSSVRNAWPAI 222          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 66/137 (48.18%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  149 SSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            +S+ +G   + L   Q     ED + +     + K  + +PSG  KRA    +GS   SC V+ C ++++N + YHRRHKVCE H+K P VL  G +QRFCQQCSRFH L EFDE KRSCR+RL GHN RRRK   D
Sbjct:    3 TSKGEGKRVIKLPGSQEQGEEEDDIGE----DSKKTRALTPSG--KRA----SGSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHD 129          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL15_ARATH (Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 71/162 (43.83%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  191 GQVNSSAEDSLNKCKEPGASKM------ESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGTFLSNYQGASLLPFSSSHMYPSATVVK 658
            GQ  S    S       G  +       E  S S S  R       S TA C V+GC  DLSN + Y+ RHKVC +HSK+ +V++ G  QRFCQQCSRFH L EFD  KRSCR+RL  HN RRRKPQP     T  F S+Y   +     S +  P+A ++K
Sbjct:    8 GQAESGGSSSTESSSLSGGLRFGQKIYFEDGSGSRSKNRVNTVRKSSTTARCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQP----TTALFTSHYSRIA----PSLYGNPNAAMIK 161          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL4_ORYSJ (Squamosa promoter-binding-like protein 4 OS=Oryza sativa subsp. japonica GN=SPL4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  287 RARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLS 568
            RA     G     C V+GC  +L   +DYHR+H+VCE HSK P+V++ GQ++RFCQQCSRFH L EFD+ KRSCR+RL  HN RRRKPQ D  S
Sbjct:   55 RAEEGGGGGGEVRCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQTDVFS 148          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  320 ASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            A C V+ C++DLS  +DYHRRHKVCE+HSK     + G  QRFCQQCSRFH L+EFDEGKRSCR+RL GHN+RRRK  P+
Sbjct:  104 AVCQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPE 183          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL8_ARATH (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  281 FKRARAANNGS----QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRK 547
            ++R+R   +G      T  C  +GC++DLS+ + YHRRHKVCE HSK   V+  G  QRFCQQCSRFH L EFD GKRSCRKRL  HNRRRRK
Sbjct:  169 YRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 261          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL5_ORYSJ (Squamosa promoter-binding-like protein 5 OS=Oryza sativa subsp. japonica GN=SPL5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 54/85 (63.53%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  296 AANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP 550
            AA +  Q   C  +GC +DLS  + YHRRHKVC+ H+K   VL  G++QRFCQQCSRFH L EFDE KRSCRKRL  HNRRRRKP
Sbjct:  197 AAAHHHQPPRCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKP 281          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSJ (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  284 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGT 580
            ++ +AA        C V+GCD  L   ++YHRRHKVCE+H+K P+V++ G +QRFCQQCSRFH L EFD+ K+SCR+RL GHN RRR+    +    G+
Sbjct:   94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRRRSNASEAMARGS 192          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL7_ORYSI (Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  284 KRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTGT 580
            ++ +AA        C V+GCD  L   ++YHRRHKVCE+H+K P+V++ G +QRFCQQCSRFH L EFD+ K+SCR+RL GHN RRR+    +    G+
Sbjct:   94 RKEKAATAVPVVPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKSCRRRLAGHNERRRRSNASEAMARGS 192          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL1_ORYSJ (Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 70/175 (40.00%), Postives = 94/175 (53.71%), Query Frame = 2
Query:   65 MDWNLKP-AWDFTEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVN-----SSAEDSLNKCKEPGASKMESPSPSGSFKRA------RAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQ 553
            ++W+L    WD   F   A P+  +  + S R  G    ++  G V+     S  +D   +C     +  +    SG   R+      R     S    C VDGC  +LS+ RDY++RHKVCE+H+K+  V I   + RFCQQCSRFH L+EFDEGK+SCR RL  HNRRRRK Q
Sbjct:   10 LEWDLNDWRWDSNLFL--ATPSNASPSKCSRRELGRAEGEIDFGVVDKRRRVSPEDDDGEECINAATTNGDDGQISGQRGRSSEDEMPRQGTCSSSGPCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQ 182          
The following BLAST results are available for this feature:
BLAST of CF836045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL14_ORYSJ4.005e-2840.24Squamosa promoter-binding-like protein 14 OS=Oryza... [more]
SBP1_ANTMA4.005e-2848.18Squamosa promoter-binding protein 1 OS=Antirrhinum... [more]
SPL15_ARATH8.923e-2843.83Squamosa promoter-binding-like protein 15 OS=Arabi... [more]
SPL4_ORYSJ1.165e-2757.45Squamosa promoter-binding-like protein 4 OS=Oryza ... [more]
SPL1_ARATH1.165e-2766.25Squamosa promoter-binding-like protein 1 OS=Arabid... [more]
SPL8_ARATH9.865e-2759.14Squamosa promoter-binding-like protein 8 OS=Arabid... [more]
SPL5_ORYSJ1.683e-2663.53Squamosa promoter-binding-like protein 5 OS=Oryza ... [more]
SPL7_ORYSJ8.352e-2650.51Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL7_ORYSI8.352e-2650.51Squamosa promoter-binding-like protein 7 OS=Oryza ... [more]
SPL1_ORYSJ8.352e-2640.00Squamosa promoter-binding-like protein 1 OS=Oryza ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836045 ID=CF836045; Name=CF836045; organism=Citrus sinensis; type=EST; length=774bp
GTTTGAGAAGGCGTTTAGGGAATTAATTAAAGAATAAAGTCCAACTCTTC
AACTGTTGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACT
GAATTTGAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAG
TAGCAGGACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTA
ATAGTTCGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCA
AAAATGGAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGC
TAACAATGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGG
ACCTTAGTAATTGTAGGGATTACCATAGGCGCCATAAGGTGTGTGAGCTC
CACTCGAAGACGCCTCAGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTG
TCAGCAATGCAGCAGATTTCATTGCCTGGAGGAGTTTGATGAAGGGAAGA
GAAGCTGCAGGAAACGTCTTGATGGGCACAACAGAAGACGAAGGAAACCT
CAGCCAGATCAGCTGTCACGTACTGGAACCTTTTTGTCCAATTACCAAGG
TGCCTCATTATTACCTTTCTCCAGTTCACATATGTATCCGTCCGCAACTG
TGGTGAAACCCACCTGGACTGGAGTTGTTAATACTGAAGCAGATGCAAGG
TGCTACAACGAGCATCATCGTCTAAACTTGCCTGACGAACGGAACCTATT
TTTCCGATCCCCTTCAAGCAGCTA
back to top