CF836045
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.091e-25 Identity = 61/129 (47.29%), Postives = 74/129 (57.36%), Query Frame = 2 Query: 173 SVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559 S + G +SS+ S+ GA + +PSG G C V+ C DLS Y+RRHKVC+ HSK P VL+ G +QRFCQQCSRFH L EFD+ KRSCR+RL GHN RRRK D Sbjct: 69 SAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSG----------GGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAAD 187
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL3_ARATH (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25 Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2 Query: 311 SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559 S + C V+ C +D+S + YH+RHKVC+ H+K P V I G QRFCQQCSRFH L EFDE KRSCR+RL GHN RRRK D Sbjct: 49 SSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSJ (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica GN=SPL10 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25 Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 314 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP 550 Q C +GC +DLS + YHRRHKVCE H+K V G++QRFCQQCSRFH L EFDE KRSCRKRL HNRRRRKP Sbjct: 177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKP 255
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSI (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25 Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 314 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP 550 Q C +GC +DLS + YHRRHKVCE H+K V G++QRFCQQCSRFH L EFDE KRSCRKRL HNRRRRKP Sbjct: 177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKP 255
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSJ (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica GN=SPL8 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25 Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 2 Query: 308 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTG 577 G C +GC +DLS+ + YHRRHKVCE HSK P V+ G QRFCQQCSRFH L+EFD+ K+SCRKRL HNRRRRK +P +G Sbjct: 179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKPSDGEHSG 269
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSI (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica GN=SPL8 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25 Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 2 Query: 308 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTG 577 G C +GC +DLS+ + YHRRHKVCE HSK P V+ G QRFCQQCSRFH L+EFD+ K+SCRKRL HNRRRRK +P +G Sbjct: 179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKPSDGEHSG 269
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25 Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 302 NNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRK 547 N G C VD C +D+ + YHRRHKVCE+H+K V + G QRFCQQCSRFH L+EFDE KRSCR+RL GHN RRRK Sbjct: 46 NRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 127
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL17_ORYSJ (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL17 PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 7.070e-25 Identity = 60/133 (45.11%), Postives = 75/133 (56.39%), Query Frame = 2 Query: 182 LKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFK----RARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLS 568 LK G+ +D+ + S G K A AA C V+GC DLS + Y+ RHKVC +H+K P V++ G +QRFCQQCSRFH L EFD+ K+SCR+RL GHN RRRKP P LS Sbjct: 22 LKFGKKIYFEQDAAASASAAAVESSSTSSGGGGKKGKGVAAAAAPPPPLPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRKPTPGPLS 154
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL11_ORYSJ (Squamosa promoter-binding-like protein 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.070e-25 Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 257 ESPSPSGSFKRARAANNGSQTAS-------CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559 +S S S S KR R+A A+ C V+GC +L ++Y+R+H+VCE H+K +V++ GQ +RFCQQCSRFH EFD+ KRSCR+RL HN RRRKPQ D Sbjct: 37 DSSSASASAKRGRSAAAAGDAAAVAAEAPRCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQTD 144
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.070e-25 Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 98 TEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRK 547 ++FE+E + +E K NF+ + + LN + G E + SG A+ CLV+ C +DL NC+ Y++RH+VCE+H+K P V + G QRFCQQCSRFH L EFD+ KRSCR+RL GHN RRRK Sbjct: 24 SDFEEEEEGEDEEEEEQERVVKVNFAE-------SQLKKKKLNLGEGSGGKSGEKHTASGGGVVAQPC--------CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKRSCRRRLAGHNERRRK 158 The following BLAST results are available for this feature:
BLAST of CF836045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836045 ID=CF836045; Name=CF836045; organism=Citrus sinensis; type=EST; length=774bpback to top |