CF836045

Overview
NameCF836045
Unique NameCF836045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.091e-25
Identity = 61/129 (47.29%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  173 SVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            S  +  G  +SS+  S+      GA +    +PSG          G     C V+ C  DLS    Y+RRHKVC+ HSK P VL+ G +QRFCQQCSRFH L EFD+ KRSCR+RL GHN RRRK   D
Sbjct:   69 SAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSG----------GGGGPRCQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGHNERRRKSAAD 187          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL3_ARATH (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  311 SQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            S +  C V+ C +D+S  + YH+RHKVC+ H+K P V I G  QRFCQQCSRFH L EFDE KRSCR+RL GHN RRRK   D
Sbjct:   49 SSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSJ (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  314 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP 550
            Q   C  +GC +DLS  + YHRRHKVCE H+K   V   G++QRFCQQCSRFH L EFDE KRSCRKRL  HNRRRRKP
Sbjct:  177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKP 255          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL10_ORYSI (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  314 QTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKP 550
            Q   C  +GC +DLS  + YHRRHKVCE H+K   V   G++QRFCQQCSRFH L EFDE KRSCRKRL  HNRRRRKP
Sbjct:  177 QPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKP 255          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSJ (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica GN=SPL8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  308 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTG 577
            G     C  +GC +DLS+ + YHRRHKVCE HSK P V+  G   QRFCQQCSRFH L+EFD+ K+SCRKRL  HNRRRRK +P     +G
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKPSDGEHSG 269          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL8_ORYSI (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica GN=SPL8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  308 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLSRTG 577
            G     C  +GC +DLS+ + YHRRHKVCE HSK P V+  G   QRFCQQCSRFH L+EFD+ K+SCRKRL  HNRRRRK +P     +G
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKPSDGEHSG 269          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 50/82 (60.98%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  302 NNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRK 547
            N G     C VD C +D+   + YHRRHKVCE+H+K   V + G  QRFCQQCSRFH L+EFDE KRSCR+RL GHN RRRK
Sbjct:   46 NRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 127          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL17_ORYSJ (Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL17 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.070e-25
Identity = 60/133 (45.11%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  182 LKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFK----RARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPDQLS 568
            LK G+     +D+             + S  G  K     A AA        C V+GC  DLS  + Y+ RHKVC +H+K P V++ G +QRFCQQCSRFH L EFD+ K+SCR+RL GHN RRRKP P  LS
Sbjct:   22 LKFGKKIYFEQDAAASASAAAVESSSTSSGGGGKKGKGVAAAAAPPPPLPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRKPTPGPLS 154          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL11_ORYSJ (Squamosa promoter-binding-like protein 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.070e-25
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  257 ESPSPSGSFKRARAANNGSQTAS-------CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            +S S S S KR R+A      A+       C V+GC  +L   ++Y+R+H+VCE H+K  +V++ GQ +RFCQQCSRFH   EFD+ KRSCR+RL  HN RRRKPQ D
Sbjct:   37 DSSSASASAKRGRSAAAAGDAAAVAAEAPRCQVEGCGLELGGYKEYYRKHRVCEPHTKCLRVVVAGQDRRFCQQCSRFHAPSEFDQEKRSCRRRLSDHNARRRKPQTD 144          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.070e-25
Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   98 TEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRK 547
            ++FE+E     +  +E     K NF+        +   +  LN  +  G    E  + SG    A+          CLV+ C +DL NC+ Y++RH+VCE+H+K P V + G  QRFCQQCSRFH L EFD+ KRSCR+RL GHN RRRK
Sbjct:   24 SDFEEEEEGEDEEEEEQERVVKVNFAE-------SQLKKKKLNLGEGSGGKSGEKHTASGGGVVAQPC--------CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKRSCRRRLAGHNERRRK 158          
The following BLAST results are available for this feature:
BLAST of CF836045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
SPL13_ORYSJ1.091e-2547.29Squamosa promoter-binding-like protein 13 OS=Oryza... [more]
SPL3_ARATH1.425e-2560.24Squamosa promoter-binding-like protein 3 OS=Arabid... [more]
SPL10_ORYSJ1.425e-2565.82Squamosa promoter-binding-like protein 10 OS=Oryza... [more]
SPL10_ORYSI1.425e-2565.82Squamosa promoter-binding-like protein 10 OS=Oryza... [more]
SPL8_ORYSJ4.145e-2558.24Squamosa promoter-binding-like protein 8 OS=Oryza ... [more]
SPL8_ORYSI4.145e-2558.24Squamosa promoter-binding-like protein 8 OS=Oryza ... [more]
SPL4_ARATH5.413e-2560.98Squamosa promoter-binding-like protein 4 OS=Arabid... [more]
SPL17_ORYSJ7.070e-2545.11Squamosa promoter-binding-like protein 17 OS=Oryza... [more]
SPL11_ORYSJ7.070e-2550.00Squamosa promoter-binding-like protein 11 OS=Oryza... [more]
SBP2_ANTMA7.070e-2541.33Squamosa promoter-binding protein 2 OS=Antirrhinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836045 ID=CF836045; Name=CF836045; organism=Citrus sinensis; type=EST; length=774bp
GTTTGAGAAGGCGTTTAGGGAATTAATTAAAGAATAAAGTCCAACTCTTC
AACTGTTGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACT
GAATTTGAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAG
TAGCAGGACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTA
ATAGTTCGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCA
AAAATGGAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGC
TAACAATGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGG
ACCTTAGTAATTGTAGGGATTACCATAGGCGCCATAAGGTGTGTGAGCTC
CACTCGAAGACGCCTCAGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTG
TCAGCAATGCAGCAGATTTCATTGCCTGGAGGAGTTTGATGAAGGGAAGA
GAAGCTGCAGGAAACGTCTTGATGGGCACAACAGAAGACGAAGGAAACCT
CAGCCAGATCAGCTGTCACGTACTGGAACCTTTTTGTCCAATTACCAAGG
TGCCTCATTATTACCTTTCTCCAGTTCACATATGTATCCGTCCGCAACTG
TGGTGAAACCCACCTGGACTGGAGTTGTTAATACTGAAGCAGATGCAAGG
TGCTACAACGAGCATCATCGTCTAAACTTGCCTGACGAACGGAACCTATT
TTTCCGATCCCCTTCAAGCAGCTA
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