CF836045

Overview
NameCF836045
Unique NameCF836045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: LG1_MAIZE (Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  308 GSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQ-KQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQP 556
            G     C  +GC +DLS+ + YHRRHKVCE HSK P V+  G   QRFCQQCSRFH L+EFD+ K+SCRKRL  HNRRRRK +P
Sbjct:  179 GHHPPRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 262          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL5_ARATH (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.515e-22
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 2
Query:  326 CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            C VD C  +L+  + Y+RRH+VCE+H+K     + G +QRFCQQCSRFH L EFDE KRSCR+RL GHN RRRK   D
Sbjct:   63 CQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKISGD 140          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL7_ARATH (Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 2
Query:   98 TEFEQEAIPNVDAVDESSSRTKGNFSVDLKLGQVNSSAEDSLNKCKEPGASKMESPSPSGSFKRARAANNGSQTASCLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGH-NRRRRKP 550
            T  E E  P+ +     S R +     D +L  + S+  + +  C  P   +++         + +    GS  A C V  C++D+S  + YH+RH+VC   +    V++ G+ +R+CQQC +FH L +FDEGKRSCR++L+ H NRR+RKP
Sbjct:   70 TPAESELDPSPEESGSGSDRVRKR---DPRL--ICSNFIEGMLPCSCP---ELDQKLEDAELPKKKRVRGGSGVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 213          
BLAST of CF836045 vs. ExPASy Swiss-Prot
Match: SPL9_ORYSJ (Squamosa promoter-binding-like protein 9 OS=Oryza sativa subsp. japonica GN=SPL9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  242 GASKMESPSPSGSFKRARAANNGSQTAS-----CLVDGCDSDLSNCRDYHRRHKVCELHSKTPQVLICGQKQRFCQQCSRFHCLEEFDEGKRSCRKRLDGHNRRRRKPQPD 559
            GA K    +  GS      +  G+   +     C V GC++D+   + YHRRH+VC   +    V++ G ++R+CQQC +FH L +FDE KRSCR++L+ HN+RRR+ +PD
Sbjct:  138 GARKKPKGAGRGSGAAVGGSGGGASRGTPAEMKCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRR-KPD 247          
The following BLAST results are available for this feature:
BLAST of CF836045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
LG1_MAIZE9.234e-2561.90Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1[more]
SPL5_ARATH2.515e-2258.97Squamosa promoter-binding-like protein 5 OS=Arabid... [more]
SPL7_ARATH1.526e-1934.21Squamosa promoter-binding-like protein 7 OS=Arabid... [more]
SPL9_ORYSJ2.877e-1839.64Squamosa promoter-binding-like protein 9 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836045 ID=CF836045; Name=CF836045; organism=Citrus sinensis; type=EST; length=774bp
GTTTGAGAAGGCGTTTAGGGAATTAATTAAAGAATAAAGTCCAACTCTTC
AACTGTTGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACT
GAATTTGAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAG
TAGCAGGACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTA
ATAGTTCGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCA
AAAATGGAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGC
TAACAATGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGG
ACCTTAGTAATTGTAGGGATTACCATAGGCGCCATAAGGTGTGTGAGCTC
CACTCGAAGACGCCTCAGGTTTTGATTTGTGGGCAGAAGCAACGGTTCTG
TCAGCAATGCAGCAGATTTCATTGCCTGGAGGAGTTTGATGAAGGGAAGA
GAAGCTGCAGGAAACGTCTTGATGGGCACAACAGAAGACGAAGGAAACCT
CAGCCAGATCAGCTGTCACGTACTGGAACCTTTTTGTCCAATTACCAAGG
TGCCTCATTATTACCTTTCTCCAGTTCACATATGTATCCGTCCGCAACTG
TGGTGAAACCCACCTGGACTGGAGTTGTTAATACTGAAGCAGATGCAAGG
TGCTACAACGAGCATCATCGTCTAAACTTGCCTGACGAACGGAACCTATT
TTTCCGATCCCCTTCAAGCAGCTA
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