CF836062

Overview
NameCF836062
Unique NameCF836062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.615e-53
Identity = 99/140 (70.71%), Postives = 116/140 (82.86%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            L KKR+F+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+K RKAK EAP  EKP  V THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYLGEFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 1.919e-52
Identity = 100/140 (71.43%), Postives = 114/140 (81.43%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            L KKRTF+KF +RGVDLD LLDMS ++  KL   R RRR  RGLKRK +ALI K +KAK+ A   EKP  V THLR+MII+PE++G +IG+YNGK FNQ EIKPEMIG YLGEF+ISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   12 LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.171e-47
Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = -3
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +KK R AK  AP  EKP PV TH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYLGEFSI+Y PV+HGR G     +SRFIPLK
Sbjct:    8 KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.332e-45
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = -3
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAP--NGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGA----THSSRFIPLK 531
            KKRTFKKFSFRG ++DALL MSN +L KLF+AR RRRF RGLK++P+ LIKK R+AK+EA   N  KPE V THLRNMIIVPEMIGS++GV+NGK FN++ IKPEMIGHYL EFS++ K V H RP I        S+RFIPL+
Sbjct:   17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_DICDI (40S ribosomal protein S15 OS=Dictyostelium discoideum GN=rps15 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.876e-45
Identity = 88/139 (63.31%), Postives = 107/139 (76.98%), Query Frame = -3
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPN-GEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTFKKF++ GV L++LLD+  ++L+ L   RARR+ +R    K +  +KK R +K      GEKP  V TH RN++IVPEMIGS+IG+YNGK FNQVE+KPEMIGHY GEFS+SYK V HGRPGIGATHSSRFIPLK
Sbjct:    6 KKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGATHSSRFIPLK 144          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_NAEGR (40S ribosomal protein S15 (Fragment) OS=Naegleria gruberi GN=RPS15 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.903e-33
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = -3
Query:  118 MSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 471
            M NDEL  LF++  RR   +G+ +K   LI+K +K +  AP GEKP+ V THLR+MII+P MIG +IGVY GK +  VEIKPEM+G  L +FS++Y+PVKHG+P IGAT SS F+PLK
Sbjct:    3 MENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMIILPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKPSIGATSSSGFVPLK 120          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.206e-32
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F +RG  LD LL+MS +E  KL  AR RR  +RGL  +   L++K R AK+    G+  +P+ TH R+MI++PEM+G  I V+NGK F  +EIKPEMIGHYLGEF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRFU (30S ribosomal protein S19P OS=Pyrococcus furiosus GN=rps19p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.206e-32
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F +RG  L+ L++MS +EL +LF AR RR  +RGL  +   L++K R AK+    G+  +P+ TH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYLGEF+ + K V+HG PG+GAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.419e-32
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F +RG  LD LL+MS +E  KL  +R RR  +RGL  +   L++K R AK+    G+  +P+ TH R+MI++PEM+G  I VYNGK F  VEIK EMIGHYLGEF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRAB (30S ribosomal protein S19P OS=Pyrococcus abyssi GN=rps19p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.383e-32
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F +RG  L+ L++MS +EL KL  AR RR  +RGL  +   L++K R AK+    G+  +P+ TH R+MI++PEM+G  I V+NGK F  VEIKPEMIGHYLGEF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15A_SCHPO8.615e-5370.7140S ribosomal protein S15-A OS=Schizosaccharomyces... [more]
RS15_CAEEL1.919e-5271.4340S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15_YEAST3.171e-4765.9440S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS156_ARATH1.332e-4565.9740S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]
RS15_DICDI3.876e-4563.3140S ribosomal protein S15 OS=Dictyostelium discoid... [more]
RS15_NAEGR9.903e-3356.7840S ribosomal protein S15 (Fragment) OS=Naegleria ... [more]
RS19_THEGJ2.206e-3251.8830S ribosomal protein S19P OS=Thermococcus gammato... [more]
RS19_PYRFU2.206e-3252.6330S ribosomal protein S19P OS=Pyrococcus furiosus ... [more]
RS19_PYRKO6.419e-3251.8830S ribosomal protein S19P OS=Pyrococcus kodakarae... [more]
RS19_PYRAB8.383e-3252.6330S ribosomal protein S19P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bp
GCTAGGATTTACTCCAACAACAAAACCCTAAAAAGGAACCCCAAAAAATT
TGATCCACTTCGATGTTTTCTGAAAATAACAATAAGCTAAATATCCAGAT
CTCCAGCATACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGC
ACCAATACCAGGTCTACCATGCTTCACAGGCTTGTATGAAATAGAAAACT
CTCCCAGGTAATGCCCAATCATTTCCGGCTTGATTTCAACCTGATTAAAG
GTCTTGCCATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAAT
GATCATGTTTCGCAAATGGGTGCCAACTGGTTCGGGCTTCTCACCATTTG
GAGCCTCCCTTTTCGCCTTGCGAAACTTCTTGATCAAAGCCATGGGCTTC
CTCTTTAAACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAAAGCTT
GACGAGCTCATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTC
TGAAACTGAACTTCTTGAACGTTCTCTTCTTCGGCAGTCCTGCCGCCGCC
GCCACCGCAATATCAGCATCGCCATCCGCCATGGTTAGAGCTGGGACTG
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