CF836062

Overview
NameCF836062
Unique NameCF836062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28
Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = -3
Query:  118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513
            +F++RG  LD L +M  DE+ +L  AR RR  +RGL  +   L+ + R+A  E        P+ THLR+M I+P  +G    VYNG++F +VE++PEMIGHYLGEF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = -3
Query:  118 KFSFRGVDLDALLDMSNDELVKLFSARARRR----FQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513
            KF++RG  L+ L  M  ++L ++  AR RR     F++G   + + L++K R+A + A  G+K   + THLR+ II+PEM+G  I V+NGK F  VEI PE IGHYLGEF+++ K V+HG PG+ AT SS F+ LK
Sbjct:    6 KFTYRGYTLEELRQMPIEKLAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THEVO (30S ribosomal protein S19P OS=Thermoplasma volcanium GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+FS++G  L+ L +MS +EL+K+  ARARR   R +      L++K          G+  + + TH+R++II+P  +G I+ VYNG ++++ EIKPEMIGHYLGEF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYKGYTLEQLQEMSLEELIKILPARARRSLSREMNHDQKKLVEKLE--------GDYDD-IKTHVRDVIILPSYVGKIVEVYNGNSYSKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = -3
Query:  118 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 510
            F +RG  L+ LL++  DE +KL  AR RR  +RGLK +   L++K RKAKR A  G+K   + TH R+MII+PEM+G  I VYNG T+  V I P  IGHYLGEF+++ K V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = -3
Query:  118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+ THLR+M ++PE +G    VY G+ F +VE++PEMIGHYLGEF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = -3
Query:  118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513
            +F++RG DLD L +MS +++ +L  AR RR   RGL  +   ++ + R++  E        P+ THLR+M ++PE +G    VY G+ F +VE++PEMIGHYLGEF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  118 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 510
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K RKAK+    G+K   + TH R+MII+PEM+G  I VYNG T+  V I P  IGHYLGEF+I+ K V+HG PG+ AT SS  I  K
Sbjct:   31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKVV-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPGLKATRSSLHIAAK 160          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 63/140 (45.00%), Postives = 92/140 (65.71%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            +P++R  ++F++RG  +  L  M+  EL+ L  ARARR+F RGL R+   L+   R            E + THLR+MII+PEM+G  I ++NGK F +VEI+PE + HYLGEF+++ + V HG  GIGAT SS+++PLK
Sbjct:    9 MPRRR--EEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  118 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 510
            F +RG  L+ LL+M  DE +KL  AR RR  +RGLK +   L++K RKAKR    G+K   + TH R+MII+PEM+G  I VYNG T+  V I P  IGHYLGEF+++ + V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+FS+RG  L+ L +M  +EL+ L  ARARR + R +  +   L +K          G+K E + TH+R++I++P+ +G  I +YNG ++ + EIKPEMIGHYLGEF+++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151          
The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_NATPD3.297e-2846.9730S ribosomal protein S19P OS=Natronomonas pharaon... [more]
RS19_THEPD5.623e-2846.3230S ribosomal protein S19P OS=Thermofilum pendens ... [more]
RS19_THEVO7.344e-2845.8630S ribosomal protein S19P OS=Thermoplasma volcani... [more]
RS19_THENV7.344e-2851.1530S ribosomal protein S19P OS=Thermoproteus neutro... [more]
RS19_HALSA1.636e-2744.7030S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS31.636e-2744.7030S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_PYRIL2.137e-2751.1530S ribosomal protein S19P OS=Pyrobaculum islandic... [more]
RS19_METMJ2.137e-2745.0030S ribosomal protein S19P OS=Methanoculleus maris... [more]
RS19_PYRCJ2.791e-2750.3830S ribosomal protein S19P OS=Pyrobaculum calidifo... [more]
RS19_PICTO3.645e-2745.8630S ribosomal protein S19P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bp
GCTAGGATTTACTCCAACAACAAAACCCTAAAAAGGAACCCCAAAAAATT
TGATCCACTTCGATGTTTTCTGAAAATAACAATAAGCTAAATATCCAGAT
CTCCAGCATACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGC
ACCAATACCAGGTCTACCATGCTTCACAGGCTTGTATGAAATAGAAAACT
CTCCCAGGTAATGCCCAATCATTTCCGGCTTGATTTCAACCTGATTAAAG
GTCTTGCCATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAAT
GATCATGTTTCGCAAATGGGTGCCAACTGGTTCGGGCTTCTCACCATTTG
GAGCCTCCCTTTTCGCCTTGCGAAACTTCTTGATCAAAGCCATGGGCTTC
CTCTTTAAACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAAAGCTT
GACGAGCTCATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTC
TGAAACTGAACTTCTTGAACGTTCTCTTCTTCGGCAGTCCTGCCGCCGCC
GCCACCGCAATATCAGCATCGCCATCCGCCATGGTTAGAGCTGGGACTG
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