CF836062
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_NATPD (30S ribosomal protein S19P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps19p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.297e-28 Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = -3 Query: 118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513 +F++RG LD L +M DE+ +L AR RR +RGL + L+ + R+A E P+ THLR+M I+P +G VYNG++F +VE++PEMIGHYLGEF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFTYRGHTLDELQEMELDEVAELLPARQRRTIKRGLSVEQEKLLDEAREAGEEETANN---PIRTHLRDMPILPRFVGLTFAVYNGQSFERVEVEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THEPD (30S ribosomal protein S19P OS=Thermofilum pendens (strain Hrk 5) GN=rps19p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.623e-28 Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = -3 Query: 118 KFSFRGVDLDALLDMSNDELVKLFSARARRR----FQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513 KF++RG L+ L M ++L ++ AR RR F++G + + L++K R+A + A G+K + THLR+ II+PEM+G I V+NGK F VEI PE IGHYLGEF+++ K V+HG PG+ AT SS F+ LK Sbjct: 6 KFTYRGYTLEELRQMPIEKLAEIMPARQRRSLLRVFKQGTSEEHLKLLEKIRRAAKLASEGKKQPVIKTHLRDFIILPEMVGLTIHVHNGKEFVPVEITPEKIGHYLGEFALTTKKVEHGEPGLKATRSSMFVALK 141
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THEVO (30S ribosomal protein S19P OS=Thermoplasma volcanium GN=rps19p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28 Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = -3 Query: 118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516 K+FS++G L+ L +MS +EL+K+ ARARR R + L++K G+ + + TH+R++II+P +G I+ VYNG ++++ EIKPEMIGHYLGEF ++ K VKH PG+GAT SS+F+PLK Sbjct: 28 KEFSYKGYTLEQLQEMSLEELIKILPARARRSLSREMNHDQKKLVEKLE--------GDYDD-IKTHVRDVIILPSYVGKIVEVYNGNSYSKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28 Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = -3 Query: 118 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 510 F +RG L+ LL++ DE +KL AR RR +RGLK + L++K RKAKR A G+K + TH R+MII+PEM+G I VYNG T+ V I P IGHYLGEF+++ K V+HG PG+ AT SS I K Sbjct: 29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27 Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = -3 Query: 118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513 +F++RG DLD L +MS +++ +L AR RR RGL + ++ + R++ E P+ THLR+M ++PE +G VY G+ F +VE++PEMIGHYLGEF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.636e-27 Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = -3 Query: 118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513 +F++RG DLD L +MS +++ +L AR RR RGL + ++ + R++ E P+ THLR+M ++PE +G VY G+ F +VE++PEMIGHYLGEF ++ V+HG+ GIGAT SS+F+PLK Sbjct: 12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRIL (30S ribosomal protein S19P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps19p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27 Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = -3 Query: 118 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 510 F +RG L+ LL+M DE +KL AR RR +RGLK + L++K RKAK+ G+K + TH R+MII+PEM+G I VYNG T+ V I P IGHYLGEF+I+ K V+HG PG+ AT SS I K Sbjct: 31 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKKLMAQGKKVV-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFAITTKIVQHGEPGLKATRSSLHIAAK 160
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27 Identity = 63/140 (45.00%), Postives = 92/140 (65.71%), Query Frame = -3 Query: 118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537 +P++R ++F++RG + L M+ EL+ L ARARR+F RGL R+ L+ R E + THLR+MII+PEM+G I ++NGK F +VEI+PE + HYLGEF+++ + V HG GIGAT SS+++PLK Sbjct: 9 MPRRR--EEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PYRCJ (30S ribosomal protein S19P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps19p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.791e-27 Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = -3 Query: 118 FSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 510 F +RG L+ LL+M DE +KL AR RR +RGLK + L++K RKAKR G+K + TH R+MII+PEM+G I VYNG T+ V I P IGHYLGEF+++ + V+HG PG+ AT SS I K Sbjct: 29 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLMAQGKKVT-IKTHCRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTRIVQHGEPGLKATRSSLHIAAK 158
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27 Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = -3 Query: 118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516 K+FS+RG L+ L +M +EL+ L ARARR + R + + L +K G+K E + TH+R++I++P+ +G I +YNG ++ + EIKPEMIGHYLGEF+++ K VKH PG+GAT SS+F+PLK Sbjct: 28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPGVGATRSSKFLPLK 151 The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bpback to top |