CF836062

Overview
NameCF836062
Unique NameCF836062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_CALMQ (30S ribosomal protein S19P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps19p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.645e-27
Identity = 67/134 (50.00%), Postives = 85/134 (63.43%), Query Frame = -3
Query:  118 FKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 519
            +K F +RG   D L+ M  +E +KL  AR RR  +RGL+     L++K RKAK  A  G K  PV TH R+MII+PEM+G  I VYNG T+  V I P  IGHYLGEF+I+ K V+HG PG+ AT S+  I  K
Sbjct:   55 WKNFKYRGFTFDELMKMPMNEFIKLLPARQRRTLKRGLRPCHRQLLEKIRKAKAFAAKG-KSIPVRTHCRDMIILPEMVGLTIFVYNGITYIPVPISPWHIGHYLGEFAITTKIVQHGEPGLKATKSTLHIAAK 187          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 62/133 (46.62%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            ++F +RG  L+ L  M+ DEL  +  +R RR  +RGL  +   L+ K RK K    +    + + TH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYLGEF+++ + V+HG+PG GAT SS+F+PLK
Sbjct:    4 REFRYRGYTLEQLQTMTLDELANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPGKGATRSSKFVPLK 132          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_HALWD (30S ribosomal protein S19P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = -3
Query:  118 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREA-PNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 513
            +F++RG  LD L  MS +++  L  AR RR  +RGL  +     +K R+  R+A P     +P+ THLR+M I+P  +   I VYNG++F +V I+PEMIGHYLGEF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQAMSLEDITALLPARQRRTIERGLTTEQ----QKLRETVRDADPQKTANDPIRTHLRDMPILPSFVEKTIAVYNGQSFERVRIEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K F FRG  L+ L +MS DE+++L  +R RR  +RG   +   ++ K  K K    +  +P  + TH R+MI++P M+G   G+YNG+ F +V I+PEMIG Y GEF+ +   V+HG PG+GAT SS F+PLK
Sbjct:    4 KIFKFRGYTLEELQEMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPGMGATRSSMFVPLK 136          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F+++G  L+ L  MS +EL+K+  ARARR   R    +   L++K    +         E V TH+R++II+P  +G I+ VYNG ++ + EIKPEMIGHYLGEF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLESDE---------EDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_META3 (30S ribosomal protein S19P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 58/139 (41.73%), Postives = 88/139 (63.31%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L  L +M   + +++  AR RR  ++G+  K   L+ K +KA+R A  G+ P  + TH R+ +I PEMIG   G+YNGK F +V++  E IG +LGEF+ S K V+HG PG+GAT  S F+P+K
Sbjct:   26 PRRRV--EFKYKGFTLGELQEMPIKKFMEIVPARQRRSMKKGITPKQRKLVMKIKKARRLANRGKDPRTIRTHCRDFVITPEMIGLPFGIYNGKEFIEVKLVEEAIGRFLGEFAPSRKVVQHGSPGMGATRGSMFVPIK 162          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            KKF +RG   + L  M  D L +LF++R RR   RG+      LI++ + A+     G++  P+ THLR++I++P M G  + V++GK F  VEI  EMIGHYLGE+ I+ K V HG PG+GA+ SS ++PLK
Sbjct:    3 KKFEYRGKPAEELESMPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPGVGASRSSLYVPLK 131          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_ARCFU (30S ribosomal protein S19P OS=Archaeoglobus fulgidus GN=rps19p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            + F +RG  L+ L  M  +EL KL  AR RR+ +RG   +   L++K RK               TH R+M+++PEM+G ++ V+NGK F +VEIKPEMIGH LGEF+++ +  KH  PG+GAT SS+++PLK
Sbjct:   11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKLRKKGTAR----------THCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPGVGATRSSKYVPLK 133          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_NITMS (30S ribosomal protein S19P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 57/133 (42.86%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F++RG+  + L +MS ++L +LF+AR RR   RG+      LI++ + AK     G+   P+ TH+R++II+P M+   + V++GK F  V I+ EMIGHYLGE+ I+ + V HG PG+GA+ SS ++PLK
Sbjct:    3 KEFAYRGIPKEELDNMSLEKLFQLFNARQRRSLTRGITDGKRKLIEEIKAAKA----GKLKNPIKTHVRDLIILPYMVDVTVNVFSGKEFRPVTIRTEMIGHYLGEYVITNRKVSHGAPGVGASRSSLYVPLK 131          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.977e-26
Identity = 60/140 (42.86%), Postives = 92/140 (65.71%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            LPK++  ++F++RG  +  L  M  +E+ +L  +R RR  +RGL ++    + K R A+  A          THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYLGE++++   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRK--EEFTYRGYRVSELAKMRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLR-ARGTAK---------THLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAGVGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_CALMQ3.645e-2750.0030S ribosomal protein S19P OS=Caldivirga maquiling... [more]
RS19_KORCO4.760e-2746.6230S ribosomal protein S19P OS=Korarchaeum cryptofi... [more]
RS19_HALWD6.217e-2746.6230S ribosomal protein S19P OS=Haloquadratum walsby... [more]
RS19_METST8.120e-2744.3630S ribosomal protein S19P OS=Methanosphaera stadt... [more]
RS19_THEAC1.060e-2645.8630S ribosomal protein S19P OS=Thermoplasma acidoph... [more]
RS19_META31.385e-2641.7330S ribosomal protein S19P OS=Methanococcus aeolic... [more]
RS19_CENSY1.385e-2644.3630S ribosomal protein S19P OS=Cenarchaeum symbiosu... [more]
RS19_ARCFU1.385e-2644.3630S ribosomal protein S19P OS=Archaeoglobus fulgid... [more]
RS19_NITMS8.977e-2642.8630S ribosomal protein S19P OS=Nitrosopumilus marit... [more]
RS19_METTP8.977e-2642.8630S ribosomal protein S19P OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bp
GCTAGGATTTACTCCAACAACAAAACCCTAAAAAGGAACCCCAAAAAATT
TGATCCACTTCGATGTTTTCTGAAAATAACAATAAGCTAAATATCCAGAT
CTCCAGCATACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGC
ACCAATACCAGGTCTACCATGCTTCACAGGCTTGTATGAAATAGAAAACT
CTCCCAGGTAATGCCCAATCATTTCCGGCTTGATTTCAACCTGATTAAAG
GTCTTGCCATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAAT
GATCATGTTTCGCAAATGGGTGCCAACTGGTTCGGGCTTCTCACCATTTG
GAGCCTCCCTTTTCGCCTTGCGAAACTTCTTGATCAAAGCCATGGGCTTC
CTCTTTAAACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAAAGCTT
GACGAGCTCATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTC
TGAAACTGAACTTCTTGAACGTTCTCTTCTTCGGCAGTCCTGCCGCCGCC
GCCACCGCAATATCAGCATCGCCATCCGCCATGGTTAGAGCTGGGACTG
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