CF836062

Overview
NameCF836062
Unique NameCF836062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            LPK++   +++FRG  +  L +MS ++  +L  A+ RR  +RG       ++++FR  K         E V TH RNMII PEMIG  + VYNGK F ++EI PEMIGH  GE+S +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516
            K+F ++G  L  L  MS +EL K+  AR RR   R LK       KK  K    A  G+  +P+ TH RN II+P M+G  + VYNGK +  V+IKPEMIGHYLGEFS + K  KH  PGIGAT SS  +  K
Sbjct:    8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.211e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+      L+ K +KA+R    G++P  + TH R+ +I PEMIG   G+YNGK F ++++  E +G +LGE + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.926e-24
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+  K   L+ K +KA+R    G++   + TH R+ +I PEMIG   G+YNGK F ++++  E +G +LGE + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.434e-24
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            LP+++  ++F++ G  +D L  MS ++L+ +  +RARR+  RG       L+   R       NG +   + TH R+MII+PEMIG  I +YNGK F +VE++PE + HYLGEF+++ + V HG  GIGAT SS+F+PLK
Sbjct:    9 LPRRK--EEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS------NGSR---IRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 51/139 (36.69%), Postives = 84/139 (60.43%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+  K   L+ K +KA+R    G+    + TH R+ +I PEMIG   G+YNGK F ++++  E +G +LGE + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 52/139 (37.41%), Postives = 83/139 (59.71%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L+ L +M   + +++  +R RR   RG+      L+ K +KA+R    G++P  + TH R+ +I PEMIG   G+YNGK F  V +  E +G +LGE + +   V+HG PG+GAT  S F+P+K
Sbjct:   25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.872e-23
Identity = 51/139 (36.69%), Postives = 83/139 (59.71%), Query Frame = -3
Query:  118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534
            P++R   +F ++G  L  L +M   + +++  AR RR   RG+      L+ K +KA+R    G++P  + TH R+ +I PEMIG  I +Y GK F ++++  E +G +LGE + +   V+HG PG+GAT  S F+P+K
Sbjct:   24 PRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.193e-23
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ +F++ K+          + TH R+MII+PEMIG  I V+NGK F  VE++PEMIGH  GEF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136          
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.290e-23
Identity = 54/140 (38.57%), Postives = 87/140 (62.14%), Query Frame = -3
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            LPK++   ++++RG  +  L ++S +E  +L  +R RR  +RG       ++ +F++ K+          + TH R+MII+PEMIG  I ++NGK F  V+++PEM+GH  GEF+ +   V HG  G+GAT SS+F+PLK
Sbjct:    9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136          
The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_METBU1.172e-2544.2930S ribosomal protein S19P OS=Methanococcoides bur... [more]
RS19_NANEQ3.411e-2548.1230S ribosomal protein S19P OS=Nanoarchaeum equitan... [more]
RS19_METM72.211e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM54.926e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METHJ6.434e-2442.8630S ribosomal protein S19P OS=Methanospirillum hun... [more]
RS19_METMP8.402e-2436.6930S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METM68.402e-2437.4130S ribosomal protein S19P OS=Methanococcus maripa... [more]
RS19_METVS1.872e-2336.6930S ribosomal protein S19P OS=Methanococcus vannie... [more]
RS19_METMA3.193e-2340.7130S ribosomal protein S19P OS=Methanosarcina mazei... [more]
RS19_METAC9.290e-2338.5730S ribosomal protein S19P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bp
GCTAGGATTTACTCCAACAACAAAACCCTAAAAAGGAACCCCAAAAAATT
TGATCCACTTCGATGTTTTCTGAAAATAACAATAAGCTAAATATCCAGAT
CTCCAGCATACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGC
ACCAATACCAGGTCTACCATGCTTCACAGGCTTGTATGAAATAGAAAACT
CTCCCAGGTAATGCCCAATCATTTCCGGCTTGATTTCAACCTGATTAAAG
GTCTTGCCATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAAT
GATCATGTTTCGCAAATGGGTGCCAACTGGTTCGGGCTTCTCACCATTTG
GAGCCTCCCTTTTCGCCTTGCGAAACTTCTTGATCAAAGCCATGGGCTTC
CTCTTTAAACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAAAGCTT
GACGAGCTCATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTC
TGAAACTGAACTTCTTGAACGTTCTCTTCTTCGGCAGTCCTGCCGCCGCC
GCCACCGCAATATCAGCATCGCCATCCGCCATGGTTAGAGCTGGGACTG
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