CF836062
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25 Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = -3 Query: 118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537 LPK++ +++FRG + L +MS ++ +L A+ RR +RG ++++FR K E V TH RNMII PEMIG + VYNGK F ++EI PEMIGH GE+S + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25 Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = -3 Query: 118 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 516 K+F ++G L L MS +EL K+ AR RR R LK KK K A G+ +P+ TH RN II+P M+G + VYNGK + V+IKPEMIGHYLGEFS + K KH PGIGAT SS + K Sbjct: 8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.211e-24 Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = -3 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ L+ K +KA+R G++P + TH R+ +I PEMIG G+YNGK F ++++ E +G +LGE + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.926e-24 Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = -3 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ K L+ K +KA+R G++ + TH R+ +I PEMIG G+YNGK F ++++ E +G +LGE + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 6.434e-24 Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = -3 Query: 118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537 LP+++ ++F++ G +D L MS ++L+ + +RARR+ RG L+ R NG + + TH R+MII+PEMIG I +YNGK F +VE++PE + HYLGEF+++ + V HG GIGAT SS+F+PLK Sbjct: 9 LPRRK--EEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS------NGSR---IRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24 Identity = 51/139 (36.69%), Postives = 84/139 (60.43%), Query Frame = -3 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ K L+ K +KA+R G+ + TH R+ +I PEMIG G+YNGK F ++++ E +G +LGE + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24 Identity = 52/139 (37.41%), Postives = 83/139 (59.71%), Query Frame = -3 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ L+ K +KA+R G++P + TH R+ +I PEMIG G+YNGK F V + E +G +LGE + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.872e-23 Identity = 51/139 (36.69%), Postives = 83/139 (59.71%), Query Frame = -3 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L L +M + +++ AR RR RG+ L+ K +KA+R G++P + TH R+ +I PEMIG I +Y GK F ++++ E +G +LGE + + V+HG PG+GAT S F+P+K Sbjct: 24 PRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.193e-23 Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = -3 Query: 118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537 LPK++ ++++RG + L ++S +E +L +R RR +RG ++ +F++ K+ + TH R+MII+PEMIG I V+NGK F VE++PEMIGH GEF+ + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.290e-23 Identity = 54/140 (38.57%), Postives = 87/140 (62.14%), Query Frame = -3 Query: 118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537 LPK++ ++++RG + L ++S +E +L +R RR +RG ++ +F++ K+ + TH R+MII+PEMIG I ++NGK F V+++PEM+GH GEF+ + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136 The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bpback to top |