CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_COPC7 (40S ribosomal protein S0 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.880e-78
Identity = 141/227 (62.11%), Postives = 178/227 (78.41%), Query Frame = 3
Query:   39 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATA 716
            T+  P  LS  E DIQ++LAA+ H+GTKNCD QME YV+KRR DGI+I+N+GKTWEKL +AAR+I A+ENP DI V SARPYG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR+PE+ ++ ++EE AA   A A
Sbjct:    2 TSKLPSILSATEEDIQLLLAAQCHIGTKNCDKQMEPYVWKRRADGIHILNIGKTWEKLVLAARIIAAVENPNDICVISARPYGHRAVLKFAANTGAQAIAGRFTPGSFTNYITRSFKEPRIIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLQFVDVAIPTNNKTRHSIGLIWWLLAREVLRLRGTIPRTPDGWNVMVDMFFYRDPEEVEKQQQEEAAAKAAAAA 228          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DIACI (40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.643e-78
Identity = 141/219 (64.38%), Postives = 173/219 (79.00%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATA 716
            LS KE D+  ML A+ H+G++N D+QME+YV+KRRNDG++I+NL +TWEKL +AAR IVAIE+P D+ V S+RP GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EAA  NIP IAFC+T+SP+R+VDI IP NNK  HSIG ++WLLAR VL+ RGTI    KWDV+VDLFFYR+PE   +AE+EE A  + A A
Sbjct:    8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPE---EAEKEEQAGKESAAA 223          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROYA (40S ribosomal protein SA OS=Drosophila yakuba GN=sta PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.284e-77
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPE---EAEKEEAAA 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROTE (40S ribosomal protein SA OS=Drosophila teissieri GN=sta PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.284e-77
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPE---EAEKEEAAA 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROSI (40S ribosomal protein SA OS=Drosophila simulans GN=sta PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.284e-77
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPE---EAEKEEAAA 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROSE (40S ribosomal protein SA OS=Drosophila sechellia GN=sta PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.284e-77
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPE---EAEKEEAAA 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROME (40S ribosomal protein SA OS=Drosophila melanogaster GN=sta PE=1 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.284e-77
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:   51 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPE---EAEKEEAAA 260          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROER (40S ribosomal protein SA OS=Drosophila erecta GN=sta PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.284e-77
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRDPE---EAEKEEAAA 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_NEMVE (40S ribosomal protein SA OS=Nematostella vectensis GN=v1g198553 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.290e-77
Identity = 138/214 (64.49%), Postives = 169/214 (78.97%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAI 701
            L  KE D+   LAA VHLG  NCDFQME YV+KR++DG+ IIN+ KTWEKL +AAR+IV IENP D+ V SARPYGQRA+LK+A +T A  IAGR TPGTFTNQ+Q +F EPRLLI+ DPR DHQP+ EA+  NIP IAFC+TDSP+R+VD+ IP NNKG HSIG +FWLLAR VL+MRG+I     W++M DL+FYR+PE   +AE+EE AA+
Sbjct:    8 LQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPE---EAEKEEQAAL 218          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_LACBS (40S ribosomal protein S0 OS=Laccaria bicolor (strain S238N-H82) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.290e-77
Identity = 136/217 (62.67%), Postives = 174/217 (80.18%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            P  L+  E +IQ++LAA+ H+GTKNCD QME YV+KRR DGI+I+N+GKTWEKL +AARVI A+ENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+I+TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR+PE+ ++ ++EE AA
Sbjct:    6 PSVLAATEEEIQLLLAAQCHIGTKNCDKQMEPYVWKRRADGIHILNIGKTWEKLVLAARVIAAVENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLKFVDVAIPTNNKTRHSIGLIWWLLAREVLRLRGTIPRTSDGWNVMVDMFFYRDPEEVEKQQQEEAAA 222          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_COPC73.880e-7862.1140S ribosomal protein S0 OS=Coprinopsis cinerea (s... [more]
RSSA_DIACI8.643e-7864.3840S ribosomal protein SA OS=Diaphorina citri PE=2 ... [more]
RSSA_DROYA3.284e-7766.6740S ribosomal protein SA OS=Drosophila yakuba GN=s... [more]
RSSA_DROTE3.284e-7766.6740S ribosomal protein SA OS=Drosophila teissieri G... [more]
RSSA_DROSI3.284e-7766.6740S ribosomal protein SA OS=Drosophila simulans GN... [more]
RSSA_DROSE3.284e-7766.6740S ribosomal protein SA OS=Drosophila sechellia G... [more]
RSSA_DROME3.284e-7766.6740S ribosomal protein SA OS=Drosophila melanogaste... [more]
RSSA_DROER3.284e-7766.6740S ribosomal protein SA OS=Drosophila erecta GN=s... [more]
RSSA_NEMVE4.290e-7764.4940S ribosomal protein SA OS=Nematostella vectensis... [more]
RSSA_LACBS4.290e-7762.6740S ribosomal protein S0 OS=Laccaria bicolor (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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