CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_PLACH (40S ribosomal protein SA OS=Plasmodium chabaudi GN=PC000391.02.0 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.640e-68
Identity = 126/211 (59.72%), Postives = 158/211 (74.88%), Query Frame = 3
Query:   63 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPE--DTKQAEEEE 689
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++G+I     WDVMVD+F +R+PE  + K    EE
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGSIPRSQAWDVMVDMFLWRDPEQFELKNLANEE 218          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_PLAF7 (40S ribosomal protein SA OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0264 PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.209e-68
Identity = 126/213 (59.15%), Postives = 157/213 (73.71%), Query Frame = 3
Query:   63 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPED---TKQAEEEET 692
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++G I     W+VMVD+F +R+PE       A EE T
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARIIVAISNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGVIPRSEPWNVMVDMFLWRDPEQFELKNLANEENT 220          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_TOXGO (40S ribosomal protein SA OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.383e-67
Identity = 130/225 (57.78%), Postives = 165/225 (73.33%), Query Frame = 3
Query:   57 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK--WDVMVDLFFYREPEDTKQAE--EEETAAIDYATAE 719
            +LS +E  I  ML  + H+GTKN + +M  YVFK  ++GI++INL KTWEK+ MAARVIVAIENP D++V SARPYG RAVLKF++Y  A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q ++E+A  N+P IA CDTDSP+ +VDI IP NNKGK SI  ++WLLAR VL +RG + P     WDVMVD+F +R+PE+ ++ E  E+E AA   A A+
Sbjct:    8 KLSLQEDSIAKMLICKAHIGTKNVEHKMRPYVFKSTSEGIHLINLAKTWEKILMAARVIVAIENPADVLVISARPYGSRAVLKFSQYVGAQAIAGRWTPGMLTNQITQKFMEPRLLIVTDPRTDAQAVRESAYANVPVIALCDTDSPLEHVDICIPCNNKGKESIALMYWLLAREVLYLRGEL-PSRSVPWDVMVDMFLWRDPEEFERKERLEDEEAAPHTAQAD 231          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CHLVR (40S ribosomal protein SA OS=Chlorohydra viridissima PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.864e-67
Identity = 129/214 (60.28%), Postives = 159/214 (74.30%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAI 701
            LS KE D+   LAA VHLG+ N     + YVFKR++DGI+IINL KTWEKL +AAR+I +IENP D+ V S+RPYG RAVLKFA+ T A  IAGR TPGTFTNQ+Q  F EPRLLI TDP+ D+Q + EA+  NIP IA C+TDSP+R+VD  IP NN+G  SIG ++W+LAR VL +RG I     W+VM DLFFYR+PED +  +EE+ AAI
Sbjct:    8 LSLKEEDVVKFLAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIASIENPADVCVISSRPYGTRAVLKFAQSTGAIPIAGRFTPGTFTNQIQKRFREPRLLISTDPQHDNQALTEASYVNIPVIALCNTDSPLRFVDCAIPCNNRGIQSIGTMWWILAREVLHLRGIISRKTPWNVMPDLFFYRDPEDIE--KEEQAAAI 219          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DICDI (40S ribosomal protein SA OS=Dictyostelium discoideum GN=rpsA PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.811e-66
Identity = 127/217 (58.53%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAI 701
            P  L+  + DI  MLA + HLG  N D +ME Y +KR+++G +IINL KTWEK+Q+AARVIVAIENP DI V SA+P GQRAVLKFA +  A A +GR TPGTFTNQ+Q+ F EPRLLI+ DP  D QP+ EA+  NIPTIA CDT S +  VDI IP NN+GK+SI  +FWLLAR VL +RGTI     W V VDLF YR+ ++  + E+E+TAA+
Sbjct:    5 PAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNRGKNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYRDTDE--EPEKEKTAAV 219          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_USTMA (40S ribosomal protein S0 OS=Ustilago maydis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.590e-66
Identity = 122/225 (54.22%), Postives = 163/225 (72.44%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYA--TAE 719
            P  L+  E DI ++LAA+ H+GTKN D QM  Y++KRR DGI+++N+GKTWEK+  AAR++ AIENP DI V S R YG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+EA+  NIP I+F D+DSP+++VD+ IP N +G+HS+G L+WLL R VL+++     G    VM D+FFYR+PE+ ++  +E  AA   A  TAE
Sbjct:    5 PAALNPTEEDISLLLAAQTHIGTKNADKQMAPYIYKRRADGIHLLNIGKTWEKIVFAARILAAIENPADICVISGRQYGHRAVLKFAAQTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIREASYVNIPCISFVDSDSPLKFVDVAIPGNVRGRHSVGLLWWLLCRTVLRIK-----GGDLSVMPDMFFYRDPEEVEREAQEAAAAAQAAKETAE 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_PICPG (40S ribosomal protein S0 OS=Pichia pastoris (strain GS115) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.912e-66
Identity = 121/224 (54.02%), Postives = 157/224 (70.09%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            P        D +++LAA VHLG KNC    E YV+K R DG+ +IN+GKTWEK+ +AAR+I AI NP D++  S+R +GQRAVLKFA +T+  AIAGR TPG+FTN +   F EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  +VD+ IP NNKGKHSIG +++LL+R VL++RG +      W VM DL+FYR+PE+ +Q  EEE  A + A  E
Sbjct:    4 PASFDLTAEDAKLLLAANVHLGAKNCQVHNEPYVYKTRPDGVNVINIGKTWEKIVLAARIIAAIPNPEDVVAVSSRTFGQRAVLKFASHTNGSAIAGRFTPGSFTNYITREFKEPRLIIVTDPRTDSQAIKESSYVNIPIIALTDMDSPSEFVDVAIPCNNKGKHSIGLIWYLLSREVLRLRGVLPNRTEAWSVMPDLYFYRDPEEIEQTAEEEAEAAEGAEFE 227          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_LACTC (40S ribosomal protein S0 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.767e-65
Identity = 122/211 (57.82%), Postives = 157/211 (74.41%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDT-KQAEEEETAAID 704
            D Q++LAA VHLG+KN     E YVFK R DG+ ++N+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG +++LLAR VL++RG+ +     W +M DL+FYR+PE+  +Q  EE TAA D
Sbjct:   13 DAQLLLAANVHLGSKNVQVHQEPYVFKTRPDGVNVVNVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNKGKHSIGLIWYLLAREVLRLRGSLVDRTQPWSIMPDLYFYRDPEEVDQQVAEEATAAAD 223          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_MONBE (40S ribosomal protein SA OS=Monosiga brevicollis GN=30792 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.425e-65
Identity = 115/214 (53.74%), Postives = 158/214 (73.83%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTH-AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            L   EADIQ +L A+VHLG  NC   M +YV+KRR+DG+ +I+L KT+EK+ +AAR+I A+++P ++   S R +GQRA+LKF  +   A  IAGR TPG FTNQ+Q +F EPRLL+LTDP  DHQ ++EA+  NIP I+ CD D+P+RYVD+ IP NNK  H+IG ++W+LAR VL++RGT+    +WDVM DL+F+R+PE+ K+ EE   AA
Sbjct:    8 LKPTEADIQKLLMAKVHLGASNCTTAMSKYVYKRRSDGVNVIDLNKTYEKIVLAARIIAAVDSPANVCAISGRNFGQRAILKFCNHIGGAFPIAGRFTPGAFTNQIQKAFQEPRLLVLTDPLVDHQAVREASYVNIPIISLCDVDAPLRYVDVVIPCNNKSPHAIGIVWWMLAREVLRLRGTLPRDAEWDVMPDLYFFRDPEEIKKEEEAAAAA 221          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CLAL4 (40S ribosomal protein S0 OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.441e-64
Identity = 121/217 (55.76%), Postives = 153/217 (70.51%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYREPEDTKQAEEEETAA 698
            P   +    D +++LAA VHLG+KN     E YV+K R DG+ +IN+ KTWEK+ +AAR+I AI N  D++V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR+PE+ +Q   EE  A
Sbjct:    4 PESFALTAEDAKLLLAANVHLGSKNVQVHNEPYVYKTRPDGVNVINIAKTWEKIVLAARIIAAIPNASDVVVCSSRTFGQRAVLKFASHTGATPIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALSDVDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDREAEWSVMPDLYFYRDPEEIEQNAAEEARA 220          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_PLACH3.640e-6859.7240S ribosomal protein SA OS=Plasmodium chabaudi GN... [more]
RSSA_PLAF76.209e-6859.1540S ribosomal protein SA OS=Plasmodium falciparum ... [more]
RSSA_TOXGO1.383e-6757.7840S ribosomal protein SA OS=Toxoplasma gondii PE=2... [more]
RSSA_CHLVR6.864e-6760.2840S ribosomal protein SA OS=Chlorohydra viridissim... [more]
RSSA_DICDI5.811e-6658.5340S ribosomal protein SA OS=Dictyostelium discoide... [more]
RSSA_USTMA7.590e-6654.2240S ribosomal protein S0 OS=Ustilago maydis GN=RPS... [more]
RSSA_PICPG9.912e-6654.0240S ribosomal protein S0 OS=Pichia pastoris (strai... [more]
RSSA_LACTC3.767e-6557.8240S ribosomal protein S0 OS=Lachancea thermotolera... [more]
RSSA_MONBE6.425e-6553.7440S ribosomal protein SA OS=Monosiga brevicollis G... [more]
RSSA_CLAL42.441e-6455.7640S ribosomal protein S0 OS=Clavispora lusitaniae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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