CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_THEAN (40S ribosomal protein SA OS=Theileria annulata GN=TA10185 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.189e-64
Identity = 116/215 (53.95%), Postives = 154/215 (71.63%), Query Frame = 3
Query:   42 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEE 686
            A    +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q +KE++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R+PE  +Q  EE
Sbjct:    2 AAPTSKLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLKESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWRDPEQFEQKPEE 216          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_THEPA (40S ribosomal protein SA OS=Theileria parva GN=TP04_0748 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 115/215 (53.49%), Postives = 154/215 (71.63%), Query Frame = 3
Query:   42 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEE 686
            A    +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q ++E++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R+PE  +Q  EE
Sbjct:    2 AAPTSKLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLRESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWRDPEQFEQKPEE 216          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_LODEL (40S ribosomal protein S0 OS=Lodderomyces elongisporus GN=RPS0 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.278e-64
Identity = 124/229 (54.15%), Postives = 157/229 (68.56%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPED-----TKQAEEEETAAIDYATAE 719
            P        D +++LAA VHLG+KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR+PE+     T+  + EE   +  A AE
Sbjct:    4 PASFDLTPEDAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNIINIGKTWEKIVLAARIIAAVPNSSDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIADRTTEWSVMPDLYFYRDPEEIEQNATEDVQGEEVEEVQAAEAE 232          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CANDC (40S ribosomal protein S0 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.278e-64
Identity = 123/223 (55.16%), Postives = 157/223 (70.40%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQ--AEEEETAAIDYA 710
            P        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM DL+FYR+PE+ +Q  AEE +T  ++ A
Sbjct:    4 PASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLIAREVLRLRGIIPDRTTEWSVMPDLYFYRDPEEVEQNAAEEAKTEEVEEA 226          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_BRUMA (40S ribosomal protein SA OS=Brugia malayi GN=Bm1_41245 PE=3 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 120/212 (56.60%), Postives = 155/212 (73.11%), Query Frame = 3
Query:   69 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG--TIRPGHKWD---VMVDLFFYREPEDTKQAEEEE 689
            KE D   +LA + H+G  NCDFQME+YV+KRR DGI+II+L KTWEKL +AAR I AI+NPGD+ V SARPY QRA+LKFA +T +  I GR TPG  TNQ+Q  F EPRLLI++DPR DHQ + EA+   +P I+FC+TDSP++++DI IP NNKG  SIG ++WLLAR VL ++G  T + G   D   +M DL+FYR PE+ ++ E  E
Sbjct:   11 KEEDAIKLLACQTHVGAANCDFQMEQYVWKRRADGIHIIHLRKTWEKLLLAARAIAAIDNPGDVCVVSARPYAQRALLKFAAHTGSTPIFGRFTPGCLTNQIQKQFKEPRLLIVSDPRVDHQAVTEASYVGVPVISFCNTDSPLKFIDIAIPCNNKGVQSIGLMWWLLAREVLLIKGKMTRQTGFVLDDKEIMPDLYFYRNPEEQEKEELAE 222          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_PICST (40S ribosomal protein S0 OS=Pichia stipitis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/214 (55.14%), Postives = 152/214 (71.03%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQAEEEE 689
            P        D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR+I A+ NP D+ V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM DL+FYR+PE+ +Q   EE
Sbjct:    4 PASFDLTPEDAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNVINIGKTWEKIVLAARIIAAVPNPSDVAVCSSRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLIAREVLRLRGIIPDRTTEWSVMPDLYFYRDPEEIEQNAAEE 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CANGA (40S ribosomal protein S0 OS=Candida glabrata GN=RPS0 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 118/207 (57.00%), Postives = 149/207 (71.98%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQAEEEETA 695
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG +      W +M DL+FYR PE+ +Q   EE A
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALTDRTQPWSIMPDLYFYRNPEEIEQQTAEEAA 219          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAST (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae GN=RPS0B PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 118/208 (56.73%), Postives = 149/208 (71.63%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR PE+ +Q  EE  AA
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRNPEEVEQVAEEAAAA 220          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAS7 (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 118/208 (56.73%), Postives = 149/208 (71.63%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR PE+ +Q  EE  AA
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRNPEEVEQVAEEAAAA 220          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAS1 (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.067e-63
Identity = 118/208 (56.73%), Postives = 149/208 (71.63%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR PE+ +Q  EE  AA
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRNPEEVEQVAEEAAAA 220          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_THEAN3.189e-6453.9540S ribosomal protein SA OS=Theileria annulata GN=... [more]
RSSA_THEPA7.104e-6453.4940S ribosomal protein SA OS=Theileria parva GN=TP0... [more]
RSSA_LODEL9.278e-6454.1540S ribosomal protein S0 OS=Lodderomyces elongispo... [more]
RSSA_CANDC9.278e-6455.1640S ribosomal protein S0 OS=Candida dubliniensis (... [more]
RSSA_BRUMA1.212e-6356.6040S ribosomal protein SA OS=Brugia malayi GN=Bm1_4... [more]
RSSA_PICST1.583e-6355.1440S ribosomal protein S0 OS=Pichia stipitis GN=RPS... [more]
RSSA_CANGA1.583e-6357.0040S ribosomal protein S0 OS=Candida glabrata GN=RP... [more]
RSSA2_YEAST2.067e-6356.7340S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA2_YEAS72.067e-6356.7340S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA2_YEAS12.067e-6356.7340S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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