CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CANTR (40S ribosomal protein S0 OS=Candida tropicalis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.699e-63
Identity = 122/217 (56.22%), Postives = 151/217 (69.59%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            P        D +++LA  VHLG+KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I AI N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL+ RG I     +W VM DL+FYR+PE+ +Q   EE  A
Sbjct:    4 PASFDLTPEDAKLLLAGNVHLGSKNVQVHNKPYVYKTRPDGVNIINIGKTWEKIVLAARIIAAIPNANDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRSRGIIPDRTTEWSVMPDLYFYRDPEEIEQNAAEEAKA 220          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CANAW (40S ribosomal protein S0 OS=Candida albicans (strain WO-1) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.699e-63
Identity = 122/223 (54.71%), Postives = 156/223 (69.96%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQ--AEEEETAAIDYA 710
            P        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR+PE+ +Q   EE +T  ++ A
Sbjct:    4 PASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRTTEWSVMPDLYFYRDPEEIEQNAVEEAKTEEVEEA 226          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CANAL (40S ribosomal protein S0 OS=Candida albicans GN=RPS0 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.699e-63
Identity = 122/223 (54.71%), Postives = 156/223 (69.96%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQ--AEEEETAAIDYA 710
            P        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR+PE+ +Q   EE +T  ++ A
Sbjct:    4 PASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRTTEWSVMPDLYFYRDPEEIEQNAVEEAKTEEVEEA 226          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_PICGU (40S ribosomal protein S0 OS=Pichia guilliermondii GN=RPS0 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.014e-63
Identity = 122/219 (55.71%), Postives = 153/219 (69.86%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQAEEEETAAID 704
            P        D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR I AI N  D+ V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVDI IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR+PE+ +Q   E++ A D
Sbjct:    4 PASFDLTAEDAKLLLAANVHLGSKNVIVHNKPYVYKTRPDGVNVINIGKTWEKIVLAARTIAAIPNAADVAVCSSRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPTDYVDIAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRSTEWSVMPDLYFYRDPEEIEQNAAEDSKAED 222          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_ZYGRC (40S ribosomal protein S0 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.854e-63
Identity = 118/207 (57.00%), Postives = 150/207 (72.46%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEETA 695
            D Q++LAA  HLG +N     E YVFK R DG+ ++++GKTWEKL +AAR+I AI NP DI+  S+R +GQRAVLKF+ +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W VM DL+FYR PE+ +Q   EETA
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFKTRPDGVNVVDVGKTWEKLVLAARIIAAIPNPEDIVAISSRTFGQRAVLKFSAHTGATPIAGRFTPGSFTNYITRSFKEPRLIIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSVMPDLYFYRNPEEIEQQVAEETA 219          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_KLULA (40S ribosomal protein S0 OS=Kluyveromyces lactis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.854e-63
Identity = 118/216 (54.63%), Postives = 151/216 (69.91%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQAEEEETA 695
            P        D Q++LAA VHLG KN     E YV+K R DG+ +IN+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLK+A +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG +      W +M DL+FYR PE+ +Q   EE A
Sbjct:    4 PSTFDLTSEDAQLLLAARVHLGAKNVQVHQEPYVYKARPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKYAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALPDRTQPWAIMPDLYFYRNPEEIEQQTAEEEA 219          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_ASHGO (40S ribosomal protein S0 OS=Ashbya gossypii GN=RPS0 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.026e-62
Identity = 117/208 (56.25%), Postives = 153/208 (73.56%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            D Q++LAA VHLG+KN     E Y++K R DG+ II++GKTWEK+ +AAR+I AI N  D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D +SP  YVD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR+PE+ +Q   EE AA
Sbjct:   13 DAQLLLAANVHLGSKNVQVHQEPYLYKTRPDGVNIIHIGKTWEKIVLAARIIAAIPNAEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLESPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEIEQQAAEEAAA 220          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DEBHA (40S ribosomal protein S0 OS=Debaryomyces hansenii GN=RPS0 PE=3 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.984e-62
Identity = 118/214 (55.14%), Postives = 151/214 (70.56%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATA 716
            D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR+I AI N  D+ V S R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM DL+FYR+PE+ +Q   E+    D   A
Sbjct:   13 DAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNVINVGKTWEKIVLAARIIAAIPNAADVAVCSTRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDFQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLVAREVLRLRGIIPDRTTEWSVMPDLYFYRDPEEIEQNATEDIKTDDVEEA 226          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA1_YEAST (40S ribosomal protein S0-A OS=Saccharomyces cerevisiae GN=RPS0A PE=1 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.984e-62
Identity = 115/205 (56.10%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEE 689
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R +GQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR+PE+ +Q   EE
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEE 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA1_YEAS7 (40S ribosomal protein S0-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS0A PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.984e-62
Identity = 115/205 (56.10%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   78 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYREPEDTKQAEEEE 689
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R +GQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR+PE+ +Q   EE
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEE 217          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_CANTR2.699e-6356.2240S ribosomal protein S0 OS=Candida tropicalis GN=... [more]
RSSA_CANAW2.699e-6354.7140S ribosomal protein S0 OS=Candida albicans (stra... [more]
RSSA_CANAL2.699e-6354.7140S ribosomal protein S0 OS=Candida albicans GN=RP... [more]
RSSA_PICGU6.014e-6355.7140S ribosomal protein S0 OS=Pichia guilliermondii ... [more]
RSSA_ZYGRC7.854e-6357.0040S ribosomal protein S0 OS=Zygosaccharomyces roux... [more]
RSSA_KLULA7.854e-6354.6340S ribosomal protein S0 OS=Kluyveromyces lactis G... [more]
RSSA_ASHGO1.026e-6256.2540S ribosomal protein S0 OS=Ashbya gossypii GN=RPS... [more]
RSSA_DEBHA2.984e-6255.1440S ribosomal protein S0 OS=Debaryomyces hansenii ... [more]
RSSA1_YEAST2.984e-6256.1040S ribosomal protein S0-A OS=Saccharomyces cerevi... [more]
RSSA1_YEAS72.984e-6256.1040S ribosomal protein S0-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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