CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_ECHGR (40S ribosomal protein SA OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.098e-56
Identity = 112/228 (49.12%), Postives = 150/228 (65.79%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRE--------PEDTKQAEEEETAAIDYATAE 719
            L  KE DI++M+AA+VHLG+ N ++QM++YV+ R ++G +II+L KTWEKL +AAR I AIENP D+++   +P  QR  LKF  YT   ++ GR TPG FTNQ+Q+ F EPRLLI+ DP+ DHQP++E +  NIP I FC+TDSP++ VDIGIP NN  K+SI  + W+LAR V ++ G        DV++DLF  RE        PE   Q    E    D A AE
Sbjct:    8 LELKEDDIRLMVAAKVHLGSTNANYQMQQYVYDRNDEGNHIIHLNKTWEKLLLAARAICAIENPADVVIIGGQPTWQRGALKFGHYTGTTSVPGRFTPGAFTNQIQSGFKEPRLLIVCDPKGDHQPVREGSAVNIPVIGFCNTDSPLQCVDIGIPCNN-DKYSIALMLWMLAREVRRIWGLDPRSQPGDVIMDLFLMREHVDEPPEGPEGEAQEPPFEQGKFDAAEAE 234          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_GIALA (40S ribosomal protein SA OS=Giardia lamblia GN=GL50803_7766 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.586e-55
Identity = 103/217 (47.47%), Postives = 146/217 (67.28%), Query Frame = 3
Query:   39 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEE 689
            T+ A ++   KEAD++ ML A  HLG +N D +M+ Y+F R+ DG ++ NL K W K+  AAR++V I++P +I V + RP  QRA+LKF KYTHA A  GR  PG FTN+M  ++ EPRLL++ DP  D Q I EA+  NIPTI+ C++D+ ++++D+ IP NNK   SIG ++WLLAR VL+++G+I    +WDV  DL F   PE+    EE E
Sbjct:    6 TSQASKEYQLKEADVKKMLVATTHLGVRNIDRRMQFYIFDRQKDGTFVFNLQKVWAKIVFAARILVTIDDPAEIAVVANRPDAQRAILKFCKYTHATAFPGRFIPGNFTNRMNPNYCEPRLLLVNDPVVDRQAILEASYVNIPTISLCNSDANLKFIDVAIPCNNKTPMSIGLIYWLLAREVLRLKGSISRTEEWDVKPDL-FVALPEEIPDEEESE 221          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_STRPU (40S ribosomal protein SA (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.217e-47
Identity = 89/149 (59.73%), Postives = 117/149 (78.52%), Query Frame = 3
Query:  270 SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATA 716
            S+RPYGQRAVLKF  +T A  +AGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  NIP IA C++DSP+R+VDI IP NNK  HSIG ++W+L+R VL++RG I     W++MVDL+F+R+PE   +AE+EE  A D A A
Sbjct:    1 SSRPYGQRAVLKFGAHTGATPVAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNSDSPLRHVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMVDLYFFRDPE---EAEKEEQEARDRAVA 146          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_SULSO (30S ribosomal protein S2P OS=Sulfolobus solfataricus GN=rps2p PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.211e-40
Identity = 88/203 (43.35%), Postives = 133/203 (65.52%), Query Frame = 3
Query:   63 SQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 653
            S+K A I+++      L+A VH+GT +C   ME +V++ R +G+Y++++ K  E+L++AA+ +   + P DIIV ++RPY  R V KFA+   + A+ GR  PGTFTN   +++ EP++L+++DPRTD Q IKEAA   IP +AF DTD+ + Y+D+ IPANNKG+ S+  L+W LAR +L+ R  I P     V V  F  R
Sbjct:   27 SEKGAIIELLVPVDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFLSRYD-PQDIIVVASRPYAYRPVQKFAEVVGSRALVGRIIPGTFTNPYLSTYIEPKVLLVSDPRTDTQAIKEAAKVGIPIVAFADTDAKIDYIDLIIPANNKGRKSLALLYWALARQILRERRVIPPDGDLAVPVSEFEMR 228          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_METS3 (30S ribosomal protein S2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps2p PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.153e-40
Identity = 77/182 (42.31%), Postives = 121/182 (66.48%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 605
            +S+   ++   LAA +H+GT+     ME+Y+F+ R+DG+Y++++ KT E+++  A+++   + P DI+V + R YGQ  V KF + T A  I GR  PGT TN     F EP+++++TDPR+D Q + E+    IP IA CDT++ + +VDI IP NNKG+ +I  ++WLLAR +L+ RGTI
Sbjct:    1 MSELLIELDNYLAAGLHIGTQQKTSDMEKYIFRVRSDGLYVLDIQKTDERIRQIAKLLARYD-PEDILVVATRQYGQAPVKKFGEVTGAKTIPGRFIPGTLTNPTYAKFIEPKIIVVTDPRSDAQAVLESKQNGIPVIALCDTENLLSFVDIAIPVNNKGRKAIALVYWLLARQILRERGTI 181          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_PYRHO (30S ribosomal protein S2P OS=Pyrococcus horikoshii GN=rps2p PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.005e-38
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 644
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPEVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_ENTBH (40S ribosomal protein S0 OS=Enterocytozoon bieneusi (strain H348) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.925e-38
Identity = 81/203 (39.90%), Postives = 129/203 (63.55%), Query Frame = 3
Query:   84 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR-GTIRPGHKWDVMVDLFFYREPEDTKQAEEEE 689
            +++LA + HLG       M++Y++  R D + + +L KTW+K  +AAR    +    D+ V S + +G++ VLKFA+ T A +  GR  PG+FTN    +  EPRL+I++DP  D Q I+EAA  N PTIAFC+TD  ++YVDI IP NN+   +IG  F++L+R++  ++ GT  P  +    V+LFFYR+P + ++ +E++
Sbjct:   14 KLLLATQAHLGGVKVTKPMKKYIYGERQDKVSVFDLKKTWDKFILAARAFCGLNYGDDVTVISCKTFGKKPVLKFAETTGAKSYTGRFIPGSFTNTTIRNSCEPRLIIVSDPIVDKQAIEEAAKVNCPTIAFCNTDCDLKYVDIAIPLNNRSPKAIGASFFILSRIIRYIKFGT--PMDQDIKEVELFFYRDPIELEKLQEDQ 214          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_STAMF (30S ribosomal protein S2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 78/177 (44.07%), Postives = 113/177 (63.84%), Query Frame = 3
Query:   81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 611
            ++  LAA VH+GT  C   ME +V++ RNDG+YI+++ K  E++++AA+ +   E P  I   S R YGQ+ V+KF  Y       GR  PGTFTN     + EP +++LTDPR D Q +KEAA   IP ++  DTD+   Y+D+ IPANNKG+ S+  ++WLLAR +L+ RG + P
Sbjct:   28 LEKYLAAGVHIGTHICTKFMEPFVYRVRNDGLYILDVRKIDERIRIAAKFLSRYE-PSKIAAVSVRTYGQKPVVKFCNYVGCKPFTGRFMPGTFTNPSLKWYFEPDIVLLTDPRADSQALKEAAEIGIPIVSLADTDNRTEYIDLIIPANNKGRKSLALIYWLLARQILRERGLLPP 203          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_PYRFU (30S ribosomal protein S2P OS=Pyrococcus furiosus GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 644
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP +LI+TDPR DHQ ++EA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I+    + + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEIQSREDFKIPVEEF 195          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_PYRAB (30S ribosomal protein S2P OS=Pyrococcus abyssi GN=rps2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.142e-37
Identity = 76/188 (40.43%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 644
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   + P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ECHGR1.098e-5649.1240S ribosomal protein SA OS=Echinococcus granulosu... [more]
RSSA_GIALA1.586e-5547.4740S ribosomal protein SA OS=Giardia lamblia GN=GL5... [more]
RSSA_STRPU1.217e-4759.7340S ribosomal protein SA (Fragment) OS=Strongyloce... [more]
RS2_SULSO3.211e-4043.3530S ribosomal protein S2P OS=Sulfolobus solfataric... [more]
RS2_METS37.153e-4042.3130S ribosomal protein S2P OS=Methanobrevibacter sm... [more]
RS2_PYRHO3.005e-3840.9630S ribosomal protein S2P OS=Pyrococcus horikoshii... [more]
RSSA_ENTBH3.925e-3839.9040S ribosomal protein S0 OS=Enterocytozoon bieneus... [more]
RS2_STAMF6.695e-3844.0730S ribosomal protein S2P OS=Staphylothermus marin... [more]
RS2_PYRFU6.695e-3840.9630S ribosomal protein S2P OS=Pyrococcus furiosus G... [more]
RS2_PYRAB1.142e-3740.4330S ribosomal protein S2P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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