CF836063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29 Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 3 Query: 93 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 596 LAA VH+GT+ M++++++ R+DG+Y++++ T E+++ AA+ + + P +++V AR YGQ FA+ A I GR PGT TN + F EP ++++TDP D Q + EA +P +A CDT++ +D+ IP NNKG+ ++ ++WLLAR V + R Sbjct: 25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29 Identity = 65/171 (38.01%), Postives = 103/171 (60.23%), Query Frame = 3 Query: 93 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 605 LA+ +H+GT+ M+R++++ R DG+Y++++ KT E++ +AA+ + E P +I+ S R Y + KF + T AGR PGT TN F EP +L L+DPR D Q +KEA IP + CDT+ ++D IP NNKG+ S+ +++L+AR ++ RG I Sbjct: 14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_NATPD (30S ribosomal protein S2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps2p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29 Identity = 65/173 (37.57%), Postives = 104/173 (60.12%), Query Frame = 3 Query: 81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 599 ++ LAA VH+GT+ M+R++ + R DG+Y++++ +T ++++ AA + + P I+V S+R YG+ KFA A A GR PGT TN + EP ++++TDP D Q +KEA IP IA CD+++ VD+ +P NNKG+ ++ ++WLLA L RG Sbjct: 92 VEDYLAAGVHIGTQQKTKSMDRFIHRVRTDGLYVLDVSQTDQRIRTAASFLSNYQ-PEQILVASSRQYGRFPAEKFADAVGARARTGRFIPGTLTNPDYDGYIEPDVVVVTDPIGDSQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVIYWLLANETLDRRG 263
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_HALMA (30S ribosomal protein S2P OS=Haloarcula marismortui GN=rps2p PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.550e-29 Identity = 69/182 (37.91%), Postives = 105/182 (57.69%), Query Frame = 3 Query: 66 QKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 599 Q EAD ++ L A VH+GT+ MER++ + R DG+Y++++ T E+++ AA + E P I+ S+R YG+ KFA+ A GR PGT TN + EP ++++TDP D Q +KEA IP IA CD+++ VD+ +P NNKG+ ++ ++WLLA L RG Sbjct: 73 QSEADLLIPVEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAADFLSNYE-PEQILAASSRQYGRFPAEKFAEAIGARVRTGRFIPGTLTNPDYDGYIEPDIVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVVYWLLANETLDRRG 253
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_METLZ (30S ribosomal protein S2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps2p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.330e-29 Identity = 67/183 (36.61%), Postives = 109/183 (59.56%), Query Frame = 3 Query: 57 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 605 +L++ ++ LAA VH+GT+ D M+ ++++ R+DG+YII++ KT E+++ A+ + E P I V ++R YGQ KFA A + GR PGT TN + EP ++I+TDP D Q I EA +P IA CD ++ VD+ IP NNKG+ ++ +++LL + L+ +G + Sbjct: 9 ELNEPLVSVEEYLAAGVHIGTQQKDNDMKDFIYRVRSDGLYIIDIRKTDERIKQVAKFLARYE-PAKIFVVTSRQYGQYPAQKFADTIGALSHVGRFIPGTLTNPKLPKYVEPSVVIVTDPIGDAQVITEAVQCGMPVIALCDINNRTNNVDLVIPTNNKGRKALSMVYFLLTKEFLRQKGIV 190
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_KORCO (30S ribosomal protein S2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps2p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.690e-29 Identity = 68/176 (38.64%), Postives = 103/176 (58.52%), Query Frame = 3 Query: 84 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 611 Q L + VH+GT ME+++++ R DG+ II++ K E+++ A + + + P ++ SAR YG + V KFA+YT A I GR PGT TN EP +++L+DPR D Q E+ IP +A D D+ + +D+ IP NNKG+ S+ ++WLL R VL+ R I P Sbjct: 24 QKYLLSGVHVGTGIRTKDMEKFIYRVRPDGLCIIDIRKIDERIRTAGKFLARFD-PDRVLAVSARIYGFKPVRKFAEYTGAMYITGRILPGTLTNPQAPLHLEPDVVLLSDPRVDRQIHIESVRMGIPVVALVDADNMLENIDLAIPVNNKGRRSLALVYWLLTREVLRNRKVIPP 198
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_NANEQ (30S ribosomal protein S2P OS=Nanoarchaeum equitans GN=rps2p PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28 Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 3 Query: 81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 644 I + + A +H+GT++ M+ YV K R DG+ I ++ K E+L++A++++ E P +I+V R + KF++ T A GR+ PGT TN + EP ++++TDP D + +A I +A CDT+ Y+D IPANN+G S+ ++W+LAR L+ RG I + V V+ F Sbjct: 7 INVYVKAGIHIGTRHLTKDMKPYVSKIREDGLAIFDIRKIDERLRLASKMLSYYE-PNEILVVGRRETAITPIKKFSEITKVKAFPGRYPPGTLTNPQLKYYMEPEVILITDPIMDKNALHDAYESGITILALCDTNHTKNYIDFCIPANNRGSKSLALIYWILAREYLRNRGVIGKDEQLKVPVEEF 193
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_NITMS (30S ribosomal protein S2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps2p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25 Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 3 Query: 90 MLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI--VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEE 686 +L+ + +GT+ M ++ K +G+Y+++L T +K++ AA+ I + +EN +IV S R Y + + KF + + + GR PGT TN + EP+L++++DP+ D Q I EA IP I +TD+ +D+ IPANN+G+ ++ ++WLL R +L +G ++ ++ +D F +TK EEE Sbjct: 14 ILSTGIRVGTQVKTKFMRPFITKASPEGLYMLDLDITLDKIKTAAKFINRLGVEN---LIVCSGRQYAETPIEKFCETLGSKKLLGRFMPGTLTNPSLPYYIEPKLVLISDPQVDEQAITEATNAGIPVIGIANTDNITSNLDVIIPANNRGRKALATVYWLLVRQILIEKGELKEEDPMNIEIDDF------ETKITEEE 205
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_CENSY (30S ribosomal protein S2P OS=Cenarchaeum symbiosum GN=rps2p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20 Identity = 62/203 (30.54%), Postives = 106/203 (52.22%), Query Frame = 3 Query: 87 MMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPG--DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEE 689 ++ + + +GT+ M++++ G Y ++L T +++ AA+ I E+ G ++IV S + + + KFA+ I R PGT TN + EP+LL++ DP+ D Q + EA IP I ++D+ +D+ IPANN+G+ ++ +FWLLAR VL +RG + +D F +TK E+E Sbjct: 15 LITTSGISIGTQVKTKFMKQFISDTDPTGTYTLDLEATQGRIKAAAQFI---EHTGASELIVCSGKDSARVPIRKFAELVGCKDIHKRFMPGTLTNPDLPKYMEPKLLLVCDPQVDAQAVTEATNAGIPVIGIANSDNVTSRLDVIIPANNRGRGALAAIFWLLAREVLVIRGEVDETKPMKYEIDDF------ETKDVREDE 208 The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bpback to top |