CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29
Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 3
Query:   93 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 596
            LAA VH+GT+     M++++++ R+DG+Y++++  T E+++ AA+ +   + P +++V  AR YGQ     FA+   A  I GR  PGT TN +   F EP ++++TDP  D Q + EA    +P +A CDT++    +D+ IP NNKG+ ++  ++WLLAR V + R
Sbjct:   25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29
Identity = 65/171 (38.01%), Postives = 103/171 (60.23%), Query Frame = 3
Query:   93 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 605
            LA+ +H+GT+     M+R++++ R DG+Y++++ KT E++ +AA+ +   E P +I+  S R Y    + KF + T     AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP +  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_NATPD (30S ribosomal protein S2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 65/173 (37.57%), Postives = 104/173 (60.12%), Query Frame = 3
Query:   81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 599
            ++  LAA VH+GT+     M+R++ + R DG+Y++++ +T ++++ AA  +   + P  I+V S+R YG+    KFA    A A  GR  PGT TN     + EP ++++TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   92 VEDYLAAGVHIGTQQKTKSMDRFIHRVRTDGLYVLDVSQTDQRIRTAASFLSNYQ-PEQILVASSRQYGRFPAEKFADAVGARARTGRFIPGTLTNPDYDGYIEPDVVVVTDPIGDSQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVIYWLLANETLDRRG 263          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_HALMA (30S ribosomal protein S2P OS=Haloarcula marismortui GN=rps2p PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.550e-29
Identity = 69/182 (37.91%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   66 QKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 599
            Q EAD    ++  L A VH+GT+     MER++ + R DG+Y++++  T E+++ AA  +   E P  I+  S+R YG+    KFA+   A    GR  PGT TN     + EP ++++TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   73 QSEADLLIPVEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAADFLSNYE-PEQILAASSRQYGRFPAEKFAEAIGARVRTGRFIPGTLTNPDYDGYIEPDIVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVVYWLLANETLDRRG 253          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_METLZ (30S ribosomal protein S2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps2p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.330e-29
Identity = 67/183 (36.61%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   57 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 605
            +L++    ++  LAA VH+GT+  D  M+ ++++ R+DG+YII++ KT E+++  A+ +   E P  I V ++R YGQ    KFA    A +  GR  PGT TN     + EP ++I+TDP  D Q I EA    +P IA CD ++    VD+ IP NNKG+ ++  +++LL +  L+ +G +
Sbjct:    9 ELNEPLVSVEEYLAAGVHIGTQQKDNDMKDFIYRVRSDGLYIIDIRKTDERIKQVAKFLARYE-PAKIFVVTSRQYGQYPAQKFADTIGALSHVGRFIPGTLTNPKLPKYVEPSVVIVTDPIGDAQVITEAVQCGMPVIALCDINNRTNNVDLVIPTNNKGRKALSMVYFLLTKEFLRQKGIV 190          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_KORCO (30S ribosomal protein S2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.690e-29
Identity = 68/176 (38.64%), Postives = 103/176 (58.52%), Query Frame = 3
Query:   84 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 611
            Q  L + VH+GT      ME+++++ R DG+ II++ K  E+++ A + +   + P  ++  SAR YG + V KFA+YT A  I GR  PGT TN       EP +++L+DPR D Q   E+    IP +A  D D+ +  +D+ IP NNKG+ S+  ++WLL R VL+ R  I P
Sbjct:   24 QKYLLSGVHVGTGIRTKDMEKFIYRVRPDGLCIIDIRKIDERIRTAGKFLARFD-PDRVLAVSARIYGFKPVRKFAEYTGAMYITGRILPGTLTNPQAPLHLEPDVVLLSDPRVDRQIHIESVRMGIPVVALVDADNMLENIDLAIPVNNKGRRSLALVYWLLTREVLRNRKVIPP 198          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_NANEQ (30S ribosomal protein S2P OS=Nanoarchaeum equitans GN=rps2p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 3
Query:   81 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 644
            I + + A +H+GT++    M+ YV K R DG+ I ++ K  E+L++A++++   E P +I+V   R      + KF++ T   A  GR+ PGT TN     + EP ++++TDP  D   + +A    I  +A CDT+    Y+D  IPANN+G  S+  ++W+LAR  L+ RG I    +  V V+ F
Sbjct:    7 INVYVKAGIHIGTRHLTKDMKPYVSKIREDGLAIFDIRKIDERLRLASKMLSYYE-PNEILVVGRRETAITPIKKFSEITKVKAFPGRYPPGTLTNPQLKYYMEPEVILITDPIMDKNALHDAYESGITILALCDTNHTKNYIDFCIPANNRGSKSLALIYWILAREYLRNRGVIGKDEQLKVPVEEF 193          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_NITMS (30S ribosomal protein S2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 64/201 (31.84%), Postives = 113/201 (56.22%), Query Frame = 3
Query:   90 MLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI--VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEE 686
            +L+  + +GT+     M  ++ K   +G+Y+++L  T +K++ AA+ I  + +EN   +IV S R Y +  + KF +   +  + GR  PGT TN     + EP+L++++DP+ D Q I EA    IP I   +TD+    +D+ IPANN+G+ ++  ++WLL R +L  +G ++     ++ +D F      +TK  EEE
Sbjct:   14 ILSTGIRVGTQVKTKFMRPFITKASPEGLYMLDLDITLDKIKTAAKFINRLGVEN---LIVCSGRQYAETPIEKFCETLGSKKLLGRFMPGTLTNPSLPYYIEPKLVLISDPQVDEQAITEATNAGIPVIGIANTDNITSNLDVIIPANNRGRKALATVYWLLVRQILIEKGELKEEDPMNIEIDDF------ETKITEEE 205          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RS2_CENSY (30S ribosomal protein S2P OS=Cenarchaeum symbiosum GN=rps2p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 62/203 (30.54%), Postives = 106/203 (52.22%), Query Frame = 3
Query:   87 MMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPG--DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEE 689
            ++  + + +GT+     M++++      G Y ++L  T  +++ AA+ I   E+ G  ++IV S +   +  + KFA+      I  R  PGT TN     + EP+LL++ DP+ D Q + EA    IP I   ++D+    +D+ IPANN+G+ ++  +FWLLAR VL +RG +         +D F      +TK   E+E
Sbjct:   15 LITTSGISIGTQVKTKFMKQFISDTDPTGTYTLDLEATQGRIKAAAQFI---EHTGASELIVCSGKDSARVPIRKFAELVGCKDIHKRFMPGTLTNPDLPKYMEPKLLLVCDPQVDAQAVTEATNAGIPVIGIANSDNVTSRLDVIIPANNRGRGALAAIFWLLAREVLVIRGEVDETKPMKYEIDDF------ETKDVREDE 208          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_UNCMA1.495e-2937.5030S ribosomal protein S2P OS=Uncultured methanogen... [more]
RS2_META31.495e-2938.0130S ribosomal protein S2P OS=Methanococcus aeolicu... [more]
RS2_NATPD1.953e-2937.5730S ribosomal protein S2P OS=Natronomonas pharaoni... [more]
RS2_HALMA2.550e-2937.9130S ribosomal protein S2P OS=Haloarcula marismortu... [more]
RS2_METLZ3.330e-2936.6130S ribosomal protein S2P OS=Methanocorpusculum la... [more]
RS2_KORCO9.690e-2938.6430S ribosomal protein S2P OS=Korarchaeum cryptofil... [more]
RS2_NANEQ3.682e-2834.5730S ribosomal protein S2P OS=Nanoarchaeum equitans... [more]
RS2_NITMS4.977e-2531.8430S ribosomal protein S2P OS=Nitrosopumilus mariti... [more]
RS2_CENSY2.164e-2030.5430S ribosomal protein S2P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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