CF836063

Overview
NameCF836063
Unique NameCF836063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DANRE (40S ribosomal protein SA OS=Danio rerio GN=rpsa PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.194e-76
Identity = 139/220 (63.18%), Postives = 168/220 (76.36%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T +   AGR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGSTTFAGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVGK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_CHICK (40S ribosomal protein SA OS=Gallus gallus GN=RPSA PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.194e-76
Identity = 139/220 (63.18%), Postives = 169/220 (76.82%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVTK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 8.090e-76
Identity = 141/213 (66.20%), Postives = 167/213 (78.40%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAA 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR+PE   +AE+EE AA
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRSIEWPVVVDLFFYRDPE---EAEKEEAAA 217          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_SHEEP (40S ribosomal protein SA OS=Ovis aries GN=RPSA PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 138/220 (62.73%), Postives = 169/220 (76.82%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVTK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_RAT (40S ribosomal protein SA OS=Rattus norvegicus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 138/220 (62.73%), Postives = 169/220 (76.82%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVTK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_POSPM (40S ribosomal protein S0 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 135/223 (60.54%), Postives = 174/223 (78.03%), Query Frame = 3
Query:   51 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATA 716
            P  LS  + +IQ++LAA+ H+G+KNCD QM  YV+KRR DGI+I+N+GKTWEKL  AAR+I AIENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+++TDPR DHQ I+EA+  NIP IAFCDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR+PE+ ++ ++EE  A   A A
Sbjct:    6 PSVLSATDEEIQLLLAAQAHIGSKNCDKQMLPYVWKRRADGIHILNIGKTWEKLVFAARIIAAIENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRVDHQAIREASYVNIPVIAFCDTDAPLKFVDVAIPTNNKSRHSIGLMWWLLAREVLRLRGTIPRTTDGWNVMVDMFFYRDPEEVEKQQQEEAQAKAAAAA 228          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_PIG (40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 138/220 (62.73%), Postives = 169/220 (76.82%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVTK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_MOUSE (40S ribosomal protein SA OS=Mus musculus GN=Rpsa PE=1 SV=4)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 138/220 (62.73%), Postives = 169/220 (76.82%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVTK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_ICTPU (40S ribosomal protein SA OS=Ictalurus punctatus GN=rpsa PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 140/220 (63.64%), Postives = 167/220 (75.91%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+YV+KR++DGIYIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRA LKFA  T A   AGR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYVYKRKSDGIYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRACLKFASGTGATTFAGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVGK 224          
BLAST of CF836063 vs. ExPASy Swiss-Prot
Match: RSSA_HUMAN (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 283.108 bits (723), Expect = 1.057e-75
Identity = 138/220 (62.73%), Postives = 169/220 (76.82%), Query Frame = 3
Query:   60 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEDTKQAEEEETAAIDYATAE 719
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR+PE   + E+EE AA + A  +
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE---EIEKEEQAAAEKAVTK 224          
The following BLAST results are available for this feature:
BLAST of CF836063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_DANRE6.194e-7663.1840S ribosomal protein SA OS=Danio rerio GN=rpsa PE... [more]
RSSA_CHICK6.194e-7663.1840S ribosomal protein SA OS=Gallus gallus GN=RPSA ... [more]
RSSA_DROWI8.090e-7666.2040S ribosomal protein SA OS=Drosophila willistoni ... [more]
RSSA_SHEEP1.057e-7562.7340S ribosomal protein SA OS=Ovis aries GN=RPSA PE=... [more]
RSSA_RAT1.057e-7562.7340S ribosomal protein SA OS=Rattus norvegicus GN=R... [more]
RSSA_POSPM1.057e-7560.5440S ribosomal protein S0 OS=Postia placenta (strai... [more]
RSSA_PIG1.057e-7562.7340S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=... [more]
RSSA_MOUSE1.057e-7562.7340S ribosomal protein SA OS=Mus musculus GN=Rpsa P... [more]
RSSA_ICTPU1.057e-7563.6440S ribosomal protein SA OS=Ictalurus punctatus GN... [more]
RSSA_HUMAN1.057e-7562.7340S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836063 ID=CF836063; Name=CF836063; organism=Citrus sinensis; type=EST; length=735bp
TCTCTCGCAGGTTTTGAGAAATAAAGATGCCTTCCGGAACAGCAACGGCC
CCGAGGCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGC
CGAAGTTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACG
TGTTCAAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGCAAGACT
TGGGAGAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCC
TGGGGACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGT
TGAAGTTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACT
CCTGGTACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACT
TCTCATTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTG
CTCTTGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATG
CGTTATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCAT
TGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCA
CTATTCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTAC
AGGGAGCCAGAAGACACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTAT
TGATTATGCTACAGCAGAGTACAGCATGAATCTTA
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