CF836067

Overview
NameCF836067
Unique NameCF836067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836067_ssr498 microsatellite CF836067_ssr498:498..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1301 contig Csv1_Contig1301:11..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.851e-35
Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 412
            L++GPWT  ED +L+ Y+ +H EG WN + K +GL R GKSCRLRW N+L+P++K+G  T +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.642e-35
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 436
            + +G WT EED LL+ YI +H EG W  L + +GL+R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID NS
Sbjct:   12 MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNS 125          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.981e-35
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            ++RGPWT+EED +L+ +I +  EGRW  L KR+GL R GKSCRLRW+NYL+P VKRG +T  E+  IL LH   GNRWS IA  +PGRTDNEIKNYW T ++K+     ID
Sbjct:   23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGID 133          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.703e-34
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            L+RG WT EED LL  YI+ H EG W  L K +GL R GKSCRLRW+NYL+ DVKRGN++ +E+  I++LH+  GNRWS IA HLPGRTDNEIKNYW + + +Q
Sbjct:   12 LKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            ++RG WT EED +L  YI  + EG W  L K +GLKR GKSCRLRW+NYL+ D+KRGN+TP+E+  +++LHS  GNRWS IA HLPGRTDNEIKNYW + + ++
Sbjct:   12 IKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRK 115          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            L++GPWT EED +L+ +I RH  G W  L K++GL R GKSCRLRW+NYL+PD+KRGN + +E+ +I+ LH   GNRWS IA  LPGRTDNEIKN W T ++K+
Sbjct:   12 LKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 59/105 (56.19%), Postives = 80/105 (76.19%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            + ++G WT+EED +L+ Y+  H +G WN +AK++GLKR GKSCRLRW+NYL P+V RGN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   11 EYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.441e-33
Identity = 65/115 (56.52%), Postives = 80/115 (69.57%), Query Frame = 2
Query:   83 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            + D   +G WT EED  LI YI  H EG W  L + +GL+R GKSCRLRW+NYL+PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T V+++     ID
Sbjct:    8 EKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGID 122          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 2
Query:   77 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            E ++ + ++G WT+EED +L+ Y+  H  G+WN + +++GLKR GKSCRLRW+NYL P+V +GN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:    8 EKENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 2
Query:   77 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            E ++ + ++G WT+EED +L+ Y+  H  G+WN + +++GLKR GKSCRLRW+NYL P+V +GN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:    8 EKENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
The following BLAST results are available for this feature:
BLAST of CF836067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GAM1_ORYSI5.851e-3555.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB3_ARATH7.642e-3557.02Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB5_ARATH9.981e-3558.56Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBP_MAIZE1.703e-3461.54Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB12_ARATH2.904e-3459.62Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB4_ORYSJ8.450e-3458.65Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB23_ARATH8.450e-3456.19Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB32_ARATH1.441e-3356.52Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
GL1_ARATH1.882e-3351.82Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY1.882e-3351.82Trichome differentiation protein GL1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836067 ID=CF836067; Name=CF836067; organism=Citrus sinensis; type=EST; length=780bp
CGAAAAAGGAGCCTTTAATAATGTTAGAACAAATATGTCTTCTTTTAGTA
AGCTCTCAACTTCATCTATTTATGGCGAAAATGATTCTGATCAGCTGAGG
AGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGTACATATC
TCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGGCTTGA
AGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGAAACCT
GATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTCTTGA
ACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCACTTAC
CAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAG
AAACAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTCAAGA
GATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGACACAT
CATCATCATCATCACCATCAGCTTTATCTCAGAATCCTACAATTAATTCT
CAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCACAAAT
AATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCAAGAAT
TGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTCCTGC
ATTTCTTCATCCGAATCAATGAATTTTTCCCAAATGTCTCAGTTTTCGGA
GTACCCAACCGGTGGGCGACCATTTTCATG
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