CF836067

Overview
NameCF836067
Unique NameCF836067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836067_ssr498 microsatellite CF836067_ssr498:498..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1301 contig Csv1_Contig1301:11..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.636e-32
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            L RG WT +ED  LI YI +H    W  L K++GL R GKSCRLRW+NYL+PD+KRGN T +E+ +I+ LH   GN+WSKIA  LPGRTDNEIKN W T ++K+
Sbjct:   14 LNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 63/119 (52.94%), Postives = 85/119 (71.43%), Query Frame = 2
Query:   50 KLSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            K +T+S+  E    +L RG WT  ED +L  YI+ H EG+W+ L  ++GLKR GKSCRLRW NYL+P +KRGN++  E+  I+ LH+  GNRWS IA  LPGRTDNEIKN+W + ++K+
Sbjct:    3 KRATTSVRRE----ELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR 117          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 58/114 (50.88%), Postives = 87/114 (76.32%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 433
            ++++G W+ EED+ L+QY+  + +G W+ +AK +GL+R GKSCRLRW+NYL+PD+KRG  +PQE+  I+  HS  GNRWS+IA  LPGRTDNEIKN+W + ++K+ + +   +N
Sbjct:   17 KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSN 130          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            +G WT EED  L  YI  H EG W  L K +GL R GKSCRLRW+NYL+PD+KRGN + +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGID 122          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.948e-30
Identity = 56/105 (53.33%), Postives = 78/105 (74.29%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 409
            ++RG WT +ED  L  Y+  H EG+W  + +++GL+R GKSCRLRWLNYL+P+++RGN++  E+  I+ LH   GNRWS IA  LPGRTDNEIKNYW + + ++A
Sbjct:   12 VKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRA 116          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.948e-30
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 2
Query:   77 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            E  S  LR+G WT EED+LL Q I+++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG L+  E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:    2 EGSSKGLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 4.340e-30
Identity = 59/112 (52.68%), Postives = 80/112 (71.43%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 427
            ++R+G W+ EED  L  +I RH  G W+ + + + L R GKSCRLRW+NYL+PD+KRG  + QE+  I+ LH   GNRWS+IA HLPGRTDNEIKN+W + ++K+ R   ID
Sbjct:   13 KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGID 124          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.668e-30
Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 2
Query:   83 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 433
            D   +++GPWT EED +L+ YI  H  G W  +   +GL R  KSCRLRW NYL+P +KRG+ T  E+  I+ L +  GNRW+ IA +LP RTDN+IKNYW T ++K+   L+   N
Sbjct:    8 DKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPEN 124          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.668e-30
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query:   77 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            E  S  LR+G WT EED+LL Q I ++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG  +  E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:    2 EGSSKGLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query:   77 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            E  S  LR+G WT EED+LL   I ++ EG+W+ +  R+GL R  KSCRLRWLNYLKP +KRG L+  E   +L LH   GNRWS IA  LPGRT N++KNYW T + K+
Sbjct:    2 EGSSKGLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
The following BLAST results are available for this feature:
BLAST of CF836067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB1_MAIZE4.636e-3258.65Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
TT2_ARATH7.909e-3252.94Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB46_ARATH1.349e-3150.88Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB1_HORVU1.349e-3156.88Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYBC_MAIZE1.948e-3053.33Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB75_ARATH1.948e-3055.45Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB3_HORVU4.340e-3052.68Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB06_ANTMA5.668e-3047.86Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MY114_ARATH5.668e-3054.55Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB90_ARATH1.649e-2954.55Transcription factor MYB90 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836067 ID=CF836067; Name=CF836067; organism=Citrus sinensis; type=EST; length=780bp
CGAAAAAGGAGCCTTTAATAATGTTAGAACAAATATGTCTTCTTTTAGTA
AGCTCTCAACTTCATCTATTTATGGCGAAAATGATTCTGATCAGCTGAGG
AGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGTACATATC
TCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGGCTTGA
AGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGAAACCT
GATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTCTTGA
ACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCACTTAC
CAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAG
AAACAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTCAAGA
GATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGACACAT
CATCATCATCATCACCATCAGCTTTATCTCAGAATCCTACAATTAATTCT
CAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCACAAAT
AATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCAAGAAT
TGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTCCTGC
ATTTCTTCATCCGAATCAATGAATTTTTCCCAAATGTCTCAGTTTTCGGA
GTACCCAACCGGTGGGCGACCATTTTCATG
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