CF836067

Overview
NameCF836067
Unique NameCF836067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836067_ssr498 microsatellite CF836067_ssr498:498..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1301 contig Csv1_Contig1301:11..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 394
            +  W  EED +L  Y+ ++ +  W  + KR+GL     SCR RW+N+LKP +K+G  T +E+  +L+LH+  GN+WS++A+  PGRTDNEIKN+W  R
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNAR 115          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 2
Query:   86 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            S +L +GPWT EED  +I+ + ++   +W+++AK   LK R GK CR RW N+L PDVK+ + T +E   I   H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:   81 SPELVKGPWTKEEDQRVIELVHKYGPKKWSIIAKH--LKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 50/106 (47.17%), Postives = 73/106 (68.87%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +L +GPWT EED  +I+ + ++   RW+L+AK   LK R GK CR RW N+L P+VK+ + T  E   I E H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:   84 ELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKH--LKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct:   89 ELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 47/106 (44.34%), Postives = 74/106 (69.81%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +L +GPWT EED  +I+++ ++   RW+ +AK   LK R GK CR RW N+L P+VK+ + T +E   I + H + GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   18 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 121          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 50/133 (37.59%), Postives = 82/133 (61.65%), Query Frame = 2
Query:   11 AFNNVRTNMS-SFSKLSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +FN  +  ++   S  S+SS + E     L +G WT EED +LIQ + ++   +W+ +A+     R GK CR RW N+L+PD+K+   + +E   ++E H + GN+W++IA+ LPGRT+N IKN+W    ++Q
Sbjct:  186 SFNKTKPFLTRKLSSSSSSSSWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 317          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            L +GPWT EED  +I+ + ++   +W L+AK   LK R GK CR RW N+L P+VK+ + T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          

HSP 2 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 32/102 (31.37%), Postives = 52/102 (50.98%), Query Frame = 2
Query:  110 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR-WSKIAQHLPGRTDNEIKNYWRTRVQKQAR 412
            WT EED  L   +  + +  W  LA      R+ + C+ RWL  L PD+ +G  T +E   ++EL  K+G + W+ IA+HL GR   + +  W   +  + +
Sbjct:   34 WTQEEDEQLKMLVRHYGQNDWKFLASHFP-NRSDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVK 134          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            L +GPWT EED  +I+ + ++   +W L+AK   LK R GK CR RW N+L P+VK+   T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          

HSP 2 Score: 69.707 bits (169), Expect = 2.025e-11
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 2
Query:   71 YGENDSDQLRRGP------WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR-WSKIAQHLPGRTDNEIKNYWRTRVQKQAR 412
            Y + DSD L +        WT EED  L   + +  +  W  LA      RT + C+ RWL  L PD+ +G  T +E   ++EL  K+G + W+ IA+HL GR   + +  W   +  + +
Sbjct:   15 YQDVDSDLLEQRDNRCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVK 134          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            L +GPWT EED  +I+ + ++   +W L+AK   LK R GK CR RW N+L P+VK+   T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          

HSP 2 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = 2
Query:  110 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR-WSKIAQHLPGRTDNEIKNYWRTRVQKQAR 412
            WT EED  L   + +  +  W  LA      RT + C+ RWL  L PD+ +G  T +E   ++EL  K+G + W+ IA+HL GR   + +  W   +  + +
Sbjct:   34 WTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLNPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVK 134          
The following BLAST results are available for this feature:
BLAST of CF836067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MY104_ARATH2.306e-2344.90Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYBA_XENLA5.138e-2345.37Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBA_CHICK5.138e-2347.17Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB_MOUSE2.550e-2245.28Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_CHICK2.550e-2245.28Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_AVIMB2.550e-2244.34Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYB98_ARATH2.550e-2237.59Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYBB_CHICK3.330e-2245.71Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBB_MOUSE9.690e-2245.71Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN9.690e-2245.71Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836067 ID=CF836067; Name=CF836067; organism=Citrus sinensis; type=EST; length=780bp
CGAAAAAGGAGCCTTTAATAATGTTAGAACAAATATGTCTTCTTTTAGTA
AGCTCTCAACTTCATCTATTTATGGCGAAAATGATTCTGATCAGCTGAGG
AGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGTACATATC
TCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGGCTTGA
AGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGAAACCT
GATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTCTTGA
ACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCACTTAC
CAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAG
AAACAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTCAAGA
GATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGACACAT
CATCATCATCATCACCATCAGCTTTATCTCAGAATCCTACAATTAATTCT
CAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCACAAAT
AATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCAAGAAT
TGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTCCTGC
ATTTCTTCATCCGAATCAATGAATTTTTCCCAAATGTCTCAGTTTTCGGA
GTACCCAACCGGTGGGCGACCATTTTCATG
back to top