CF836067

Overview
NameCF836067
Unique NameCF836067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836067_ssr498 microsatellite CF836067_ssr498:498..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1301 contig Csv1_Contig1301:11..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 47/134 (35.07%), Postives = 81/134 (60.45%), Query Frame = 2
Query:    5 KGAFNNVRTNMSSFSKLSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +G +  + +N+++ ++      +       L +GPWT EED  +I+ + ++    W L+AK+    R GK CR RW N+L P+VK+ + T +E   I + H   GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct:   51 QGEWKTIASNLNNRTEQQCQHRWLRVLHPDLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLR-GRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.071e-20
Identity = 43/105 (40.95%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +L +GPWT +ED ++I+ +      +W L+A+     R GK CR RW N+L P++K+   T +E   I + H + GN+W+KIA+ LPGRTDN IKN+W + ++++
Sbjct:  133 ELIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLN-GRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.317e-20
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG--LKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 421
            R  W  EED +L+ Y+ ++    W+L+++R    L R  KSC  RW NYL+P +K+G+LT  EQ  ++ L +K GN+W KIA  +PGRT   +  +W    +KQ R L+
Sbjct:    9 RQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELR 117          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG--LKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 421
            R  W  EED +L  Y+ ++    W+L+++R    L R  KSC  RW NYL+P +K+G+LT +EQ  ++ L +K GN+W KIA  +PGRT   +  +W    +KQ R L+
Sbjct:    4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELR 112          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.547e-19
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG--LKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 421
            R  W+ EED LL  Y+ +     W+L+++R    L R  KSC  RW NYLKP +K+G+LT +EQ  ++ L  K GN+W KIA  +PGRT   +  +W    +KQ R  K
Sbjct:    4 RQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEK 112          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.639e-19
Identity = 37/105 (35.24%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   92 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +L +GPW+ EED  +I  + ++   +W+ +++     R GK CR RW N+L P + +   T +E+++++  H  +GN+W+++ + LPGR+DN IKN+W + V+K+
Sbjct:   84 ELVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKK 187          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 2
Query:   47 SKLSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 436
            S L  S     + ++   +G WT EED  L   +  H   RW  +A    L R G+ CR RW N L P +KR   T +E   IL+ HSK+GN+W++I++ LPGRT+  IKN+W + ++++    + D +S
Sbjct:  739 SGLKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCL-RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYDFSS 867          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   56 STSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +TS   G+  S  + +GPW  EED  L++ +++     W+ +A +    R GK CR RW N+L P+V++ N TP+E   I++ H+  GN+W+ I++ L GR  N IKN+W + + K+
Sbjct:  262 TTSKDNGKPSSPGIVKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIP-GRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKK 377          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.500e-18
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  101 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +GPW+ EED  L + + ++    W +++K S   R+GKSCRLRW N L P V+    + +E  +I   H+++GN+W+ IA+ L GRTDN +KN+W + ++++
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106          
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.891e-17
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   95 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT---RVQKQARHLKIDA 430
            L +G WT +ED  +I+ +  +   +W+ +A    LK R GK CR RW N+L P++K+   + +E   I + H+  GN+W++IA+ LPGRTDN IKN+W +   RV     HLK  A
Sbjct:  199 LVKGAWTKDEDDKVIELVKTYGPKKWSDIALH--LKGRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKRVSNNNVHLKSHA 312          
The following BLAST results are available for this feature:
BLAST of CF836067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYBB_XENLA1.266e-2135.07Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYB_DROME4.071e-2040.95Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
RS2_ORYSJ5.317e-2040.37Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE1.547e-1940.37Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
AS1_ARATH1.547e-1942.20Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MB3R1_ARATH2.639e-1935.24Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYBAA_DICDI5.879e-1936.92Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYBQ_DICDI7.678e-1936.75Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYB44_ARATH6.500e-1839.22Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYBA_DICDI1.891e-1740.52Myb-like protein A OS=Dictyostelium discoideum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836067 ID=CF836067; Name=CF836067; organism=Citrus sinensis; type=EST; length=780bp
CGAAAAAGGAGCCTTTAATAATGTTAGAACAAATATGTCTTCTTTTAGTA
AGCTCTCAACTTCATCTATTTATGGCGAAAATGATTCTGATCAGCTGAGG
AGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGTACATATC
TCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGGCTTGA
AGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGAAACCT
GATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTCTTGA
ACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCACTTAC
CAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAG
AAACAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTCAAGA
GATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGACACAT
CATCATCATCATCACCATCAGCTTTATCTCAGAATCCTACAATTAATTCT
CAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCACAAAT
AATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCAAGAAT
TGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTCCTGC
ATTTCTTCATCCGAATCAATGAATTTTTCCCAAATGTCTCAGTTTTCGGA
GTACCCAACCGGTGGGCGACCATTTTCATG
back to top