CF836067

Overview
NameCF836067
Unique NameCF836067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836067_ssr498 microsatellite CF836067_ssr498:498..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1301 contig Csv1_Contig1301:11..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.147e-14
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:   80 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 421
            N  DQ RRGPW+  ED  LI+ +     G W  +A+  G  RT K CR RW   LKP +  G +T +E   I+      G RW+ IA+ L GR+DN +KNYW     ++   L+
Sbjct:    3 NMPDQ-RRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGT-RTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRKKNQLR 114
[Close]
BLAST of CF836067 vs. ExPASy Swiss-Prot
Match: MYBM_DICDI (Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.551e-11
Identity = 34/106 (32.08%), Postives = 57/106 (53.77%), Query Frame = 2 
Query:   95 LRRGP--WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 406
            +RR P  WT EED  L Q +S + E +W  ++   G ++TG  C   W   L PD+++G     E+  +L L ++ G+ W KIA+ +  RTD + +  +   +Q +
Sbjct:   63 IRRSPNKWTEEEDQKLFQLVSIYGEKKWKRISAEMGGQKTGAQCAQHWKRVLSPDIRKGPWDEDEEELLLRLVNQHGSSWKKIAKRICKRTDIQCRYQYLKSLQSR 168
The following BLAST results are available for this feature:
BLAST of CF836067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB1_NEUCR1.147e-1439.47Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MYBM_DICDI1.551e-1132.08Myb-like protein M OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836067 ID=CF836067; Name=CF836067; organism=Citrus sinensis; type=EST; length=780bp
CGAAAAAGGAGCCTTTAATAATGTTAGAACAAATATGTCTTCTTTTAGTA
AGCTCTCAACTTCATCTATTTATGGCGAAAATGATTCTGATCAGCTGAGG
AGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGTACATATC
TCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCGGGCTTGA
AGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCTGAAACCT
GATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTCTTGA
ACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCACTTAC
CAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGTTCAG
AAACAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTCAAGA
GATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGACACAT
CATCATCATCATCACCATCAGCTTTATCTCAGAATCCTACAATTAATTCT
CAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCACAAAT
AATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCATCAAGAAT
TGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTCCTGC
ATTTCTTCATCCGAATCAATGAATTTTTCCCAAATGTCTCAGTTTTCGGA
GTACCCAACCGGTGGGCGACCATTTTCATG
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