CF836069

Overview
NameCF836069
Unique NameCF836069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  611 NYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            N  ++    +   K +DDGYNWRKYGQK +KG E PRSYYKCT  +CP KKKVERS D
Sbjct:  151 NNNNRSYNVVNVDKPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSD 208          

HSP 2 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 2
Query:  659 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            DDGY WRKYGQK VKG+ +PRSYYKCT P+C  +K VER+
Sbjct:  306 DDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERA 345          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2
Query:  659 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLD 784
            DDGY WRKYGQK +K S NPRSYYKCT P C  KK+VERS+D
Sbjct:  114 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSID 155          
BLAST of CF836069 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  629 SQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            + P    K  +DGYNWRKYGQK VKG+E  RSYY+CT P+C  KK++ERS
Sbjct:  101 NSPFIREKVMEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERS 150          

HSP 2 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2
Query:  659 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS 778
            +DGY WRKYGQK VKGS  PRSYY+C+ P CP KK VERS
Sbjct:  307 NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERS 346          
The following BLAST results are available for this feature:
BLAST of CF836069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WRK58_ARATH8.907e-1560.34Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK49_ARATH8.336e-1373.81Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRKY1_ARATH9.217e-1260.00WRKY transcription factor 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836069 ID=CF836069; Name=CF836069; organism=Citrus sinensis; type=EST; length=785bp
TCACCACCCAACCAATAACTTCACTTTCTCAACACATCCCTTCATGAACC
CCACTTCTTTCACTGATCTTCTTACATCTTCCGCACCGGCCGATCATGCT
CAACTTCATAGCAATAACAGCAACACAACAACAACAACAACAACTCGTGG
GTTGTCGGATCGTATAGCTGAGAGAACCGGGTCCGGTGTGCCGAAATTCA
AGTCTATCCAGCCTCCTTCATTGCCCATCTCCCCTCCTTCACTTTTCTCT
CCTTCTTCTTACTTCTCTATTCCTGCTGGCCTCAGCCCTGCTGAGCTCTT
GGACTCCCCTGTTTTGCTTAACACTTCCAACGTTCTGCCATCTCCAACAA
CTGGAGCATTTCAATCTTTCAACTGGAAGAGCAATATTGGCAGTAACGAC
CAGCAAAGTGTTAAACAGGAAAACAAAAATCAATCTGATTTCTCATTTCC
AACACAAACAAGGCCCAACACAACATCATCAATTGCACAGCAAAACCAAC
CATGGAATTATCAGGAATCCACAAAGCAAGATGTGAAATTGGCACAGAGT
TTTTCAACAACTTTGCAAAGTAACAATCAGAGCAACAGTGGGTTCCAATC
AGATTTTGGAAACTACCAACACCAACAATCTCAGCCCATTAGAGAGAGTA
AAAAATCTGATGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTC
AAAGGAAGTGAAAATCCAAGAAGTTATTACAAGTGCACATTCCCAAGTTG
TCCAACAAAGAAAAAAGTTGAAAGGTCATTGGATG
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