CF836071

Overview
NameCF836071
Unique NameCF836071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:63..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 9.299e-56
Identity = 106/152 (69.74%), Postives = 126/152 (82.89%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.706e-55
Identity = 107/152 (70.39%), Postives = 122/152 (80.26%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            M +Y+ EP+NP KSCKARG DLRVHFKNTRETA AI+ + L KA RYL DV+  KQ IPF RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:    1 MGRYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.534e-55
Identity = 112/172 (65.12%), Postives = 129/172 (75.00%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSK 572
            M +YS+EPDNP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V+  K+ IPF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:    1 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKK 171          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.872e-55
Identity = 111/172 (64.53%), Postives = 128/172 (74.42%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSK 572
            M +YS++P+NP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V   K+ IPF RF GGVGR AQAK +    QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:    1 MGRYSRDPENPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKK 171          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.872e-55
Identity = 106/152 (69.74%), Postives = 125/152 (82.24%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +YS EPDN TKSCKARGS+LRVHFKNTRETA AI+++ L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKRMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.028e-54
Identity = 107/152 (70.39%), Postives = 124/152 (81.58%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +YS EPDN TKSCKARGS+LRVHFKNTRETA AI+ + L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKHMALRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK-AFGCTQGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.290e-54
Identity = 102/152 (67.11%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.290e-54
Identity = 102/152 (67.11%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF RF GGVGR AQAK+ + +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.907e-54
Identity = 103/152 (67.76%), Postives = 128/152 (84.21%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +Y+KEPDN +KSCK+RGS+LRVHFKNTRETA AI+++PL +A+R+L++V+  K+ +PF RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:    1 MGRYAKEPDNASKSCKSRGSNLRVHFKNTRETALAIKRMPLRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 104/153 (67.97%), Postives = 119/153 (77.78%), Query Frame = 3
Query:   54 TMVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            T V YS+ P+N TKSCKARGSDLRVHFKNT E A A+R +PL +A+ +L  V  HK+ +PF RF GG+GR AQ K  +   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    2 TKVHYSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153          
The following BLAST results are available for this feature:
BLAST of CF836071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL17_BOVIN9.299e-5669.7460S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_SUBDO2.706e-5570.3960S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_BOMMO3.534e-5565.1260S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_LONON7.872e-5564.5360S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_ARGMO7.872e-5569.7460S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_IXOSC1.028e-5470.3960S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_AEDAL2.290e-5467.1160S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]
RL17_AEDAE2.290e-5467.1160S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17_ANOGA3.907e-5467.7660S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_CAEEL5.103e-5467.9760S ribosomal protein L17 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836071 ID=CF836071; Name=CF836071; organism=Citrus sinensis; type=EST; length=736bp
GACGGTAAAGCAAACCCACTTCACTGATACAGAGGCAGCATCCCTTATCA
GCCACCATGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTG
CAAAGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAA
CTGCCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTG
GAGGATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGG
TGGTGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGG
GACGATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAAT
GCTGAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACAT
TTCTCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACC
GTGCTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAG
TTGACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCA
GTTGGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCA
ATTGGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTT
TTTTACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCAT
ATTTTGTTTATTTCATATTAAGTCCAGTTTACTGTT
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