CF836071

Overview
NameCF836071
Unique NameCF836071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:63..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.699e-49
Identity = 96/149 (64.43%), Postives = 118/149 (79.19%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            YSK P NP KSCK+RGS+LR+HFKNTRE+A AI+ + LT+AK YL +V+AH++ IPF RF GGVGRT QAK      QGRWP KS + IL LL+NAE+NAE KGL+V+ L I+H+QV +AQ+QRRRTYRAHGRINPYM SP  +E  L+
Sbjct:    6 YSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAHRECIPFRRFKGGVGRTGQAK-IFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILT 153          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.998e-46
Identity = 93/149 (62.42%), Postives = 113/149 (75.84%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            MVKYS+EP N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:    1 MVKYSREPSNLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIERKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.916e-46
Identity = 93/149 (62.42%), Postives = 113/149 (75.84%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            MVKYS+EP N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:    1 MVKYSREPSNLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIDRKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.139e-45
Identity = 91/152 (59.87%), Postives = 113/152 (74.34%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            MV+Y+     P KS ++RGS LRV FKNTRETA AI    L +A+++LE+V+  K+A+P  R+ GG GR AQ K +    + RWP KSA+F+L LLKNAE+NA+ KGLD   L + HIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL L+
Sbjct:    1 MVRYAATEIAPAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRYAGGTGRAAQGK-QFGVSRARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 182.956 bits (463), Expect = 1.488e-45
Identity = 94/152 (61.84%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.488e-45
Identity = 93/152 (61.18%), Postives = 109/152 (71.71%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            MV+YS  P   TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS KF  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:    1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.315e-45
Identity = 93/152 (61.18%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YL+ V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.645e-45
Identity = 92/152 (60.53%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            MV+YS  P   TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS  F  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:    1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.645e-44
Identity = 91/152 (59.87%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            MV+Y+    NP KS  ARGS LRV +KNTRETA AI    L +A++YL+ V+ H++AIPF RF   +GRT Q K      + RWP KS  FI DLL+N ++NAE KGLD   L +SHIQVNQA KQRRRTYRAHGRIN Y SSPCHIEL L+
Sbjct:    1 MVRYAATSANPAKSASARGSYLRVSYKNTRETAQAISGWKLERAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGKEFGVT-KARWPAKSVNFIKDLLRNGQANAESKGLDASKLKVSHIQVNQAPKQRRRTYRAHGRINAYQSSPCHIELILT 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.252e-44
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            V+Y+ +     KS +ARGS LRV FKNTRETA AI  + L +A  +LE+V    + +PF R+ G +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K RRRTYRAHGRINPYM++PCHIEL L+
Sbjct:    9 VRYAAQDIPAAKSARARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILT 158          
The following BLAST results are available for this feature:
BLAST of CF836071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL17_DICDI1.699e-4964.4360S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17_THEPA2.998e-4662.4260S ribosomal protein L17 OS=Theileria parva GN=RP... [more]
RL17_THEAN3.916e-4662.4260S ribosomal protein L17 OS=Theileria annulata GN... [more]
RL17_NEUCR1.139e-4559.8760S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17A_YEAST1.488e-4561.8460S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17A_SCHPO1.488e-4561.1860S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17B_YEAST3.315e-4561.1860S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL17B_SCHPO9.645e-4560.5360S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_DEBHA1.645e-4459.8760S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17_ASPFU6.252e-4458.9460S ribosomal protein L17 OS=Aspergillus fumigatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836071 ID=CF836071; Name=CF836071; organism=Citrus sinensis; type=EST; length=736bp
GACGGTAAAGCAAACCCACTTCACTGATACAGAGGCAGCATCCCTTATCA
GCCACCATGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTG
CAAAGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAA
CTGCCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTG
GAGGATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGG
TGGTGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGG
GACGATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAAT
GCTGAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACAT
TTCTCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACC
GTGCTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAG
TTGACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCA
GTTGGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCA
ATTGGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTT
TTTTACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCAT
ATTTTGTTTATTTCATATTAAGTCCAGTTTACTGTT
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