CF836071

Overview
NameCF836071
Unique NameCF836071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:63..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = 3
Query:   84 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            NP K+ +A G ++ +  K+ RE   +I  + L +A ++LEDV+A ++ + F R C  VG     K +     GR+PVK+AK IL +L++A++NAE KGL+ + L I HI  N+    +R   RA GR  P      HI++ L
Sbjct:   14 NPEKTARAMGRNIPISRKHAREICKSINGMKLDEAIKFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_STAMF (50S ribosomal protein L22P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 57/150 (38.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            YS +  + ++  KA   D+ V  K+ RE   AIR   +++AK+ LE+V+A ++ IPF R+ G +   R   AK + P G  R+PVK+AK++L LL++ E+NA+ KGLD D L I HI  ++    +R   RA GR  P      H+E+ +
Sbjct:    6 YSYKLRDESRIAKAVQFDIPVSIKDMREAVAAIRGKKVSEAKKLLENVIALREPIPFKRYKGKLSHKRGLPAKWKWPIG--RYPVKAAKYLLRLLEHVEANADNKGLDKDKLVIVHIAAHKGMTLKRWMPRAFGRATPKFRRTSHVEIVV 153          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   66 YSKEPD--NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            YS  P+  +  ++ KA   +LR+  K+ RE   AIR +PL +AK +L  V+  ++A+PF +    V    Q   R     GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI  ++ +  R    RA GR  P+ +   HIE+ L
Sbjct:    9 YSIPPEELDDERTAKAFIRELRISPKHAREICRAIRGMPLDRAKEFLRRVIRKEEAVPFRKHKKKVPHRRQI--RPGWDAGRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M  YS   D    + +AR  +  +  K+    AH IR + L  AK+ LEDV++ K AIP+ R+   V       +R   G GR+PVK+AK  +DLL N E+NAE KG++ D+L I H+  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:    1 MKGYSMSVDE--NNARARIVEADISLKDAVNIAHHIRGMKLDYAKQILEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            VKY+ + ++ + + +A  + L++  K+  E    IR + L KAK+YLE+V+  ++ + F R+   VG       R  NG   GR+PVK+A  IL +L+NAE+NAE KGLD + L I HI  ++    R    RA GR  P+ +   H+++ L
Sbjct:    4 VKYAYKEEDRSGTARASATHLKISPKHAVEICREIRGMELEKAKKYLEEVIRMERPVAFKRYNRKVGH-----RRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_PYRHO (50S ribosomal protein L22P OS=Pyrococcus horikoshii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            YS +  +P +  +A G DLR+  K   E    +R + L  A RYL++V+A K+ +P  R+    G     K     G GR+PVK AK I  +L NA++NAE KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:    7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDEVIALKRPVPLRRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAHRGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   63 KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            +YS E + P ++ KA   D+ + +K T ET   I+   + +A+R L ++   K+++P  R+   VG  +        G GR+PVK AK +L LL N E+NAE KGL+V+ L I H   ++  K R    RA GR  PY     H+E+
Sbjct:    5 RYSVELE-PERTAKASLRDVSMSYKLTVETLRLIKGKSIEEARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            YS +  +P +  +A G DLR+  K   E    +R + L  A RYL+DV+A ++ +P  R+    G     K     G GR+PVK AK I  +L NA++NA+ KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:    7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_HYPBU (50S ribosomal protein L22P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   93 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            KS KA   D  + +K   E A  ++ + + +A+R+LE V   ++ IP  R+ G     R   AK + P G  R+PVK+AK +L LL N  +NAEVKGLD + L I HI V++ +  +R   RA GR  P      HIE+ ++
Sbjct:   14 KSAKAMVWDAPISYKKIVELARLLKGMKVDEARRFLERVARGEEPIPVRRYSGKQAHHRGLAAKYKWPIG--RYPVKAAKILLRLLDNVTNNAEVKGLDTERLRIVHIAVHKGRVLKRWMPRAFGRATPKFKKYSHIEIVVA 153          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_META3 (50S ribosomal protein L22P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            + Y  E D P K+ +A G  LR+  K+T E    I  + L KA  YL  V+  KQ +PF R    V      K ++    GR+P K++  IL +L+NA+ NAE KG++ + L I HI  N+    +R   RA GR +P      H+++ L
Sbjct:    4 LNYKVETD-PNKTARAMGRSLRISRKHTIEICREISGMKLDKAIAYLNRVIELKQVVPFKRHGKDV---PHKKGKYGWTAGRFPQKASTQILSVLENAKKNAEYKGMNTEKLRIKHISSNKGFTIKRHMPRAFGRASPKNQETVHVQVIL 149          
The following BLAST results are available for this feature:
BLAST of CF836071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL22_METJA1.187e-1837.3250S ribosomal protein L22P OS=Methanocaldococcus j... [more]
RL22_STAMF2.645e-1838.0050S ribosomal protein L22P OS=Staphylothermus mari... [more]
RL22_METKA2.645e-1838.6750S ribosomal protein L22P OS=Methanopyrus kandler... [more]
RL22_THEVO4.512e-1834.8750S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_METTH1.005e-1736.1850S ribosomal protein L22P OS=Methanobacterium the... [more]
RL22_PYRHO2.924e-1737.8450S ribosomal protein L22P OS=Pyrococcus horikoshi... [more]
RL22_THEPD6.515e-1736.0550S ribosomal protein L22P OS=Thermofilum pendens ... [more]
RL22_PYRAB8.509e-1737.1650S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_HYPBU1.451e-1638.0350S ribosomal protein L22P OS=Hyperthermus butylic... [more]
RL22_META37.203e-1635.3350S ribosomal protein L22P OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836071 ID=CF836071; Name=CF836071; organism=Citrus sinensis; type=EST; length=736bp
GACGGTAAAGCAAACCCACTTCACTGATACAGAGGCAGCATCCCTTATCA
GCCACCATGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTG
CAAAGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAA
CTGCCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTG
GAGGATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGG
TGGTGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGG
GACGATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAAT
GCTGAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACAT
TTCTCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACC
GTGCTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAG
TTGACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCA
GTTGGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCA
ATTGGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTT
TTTTACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCAT
ATTTTGTTTATTTCATATTAAGTCCAGTTTACTGTT
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