CF836071

Overview
NameCF836071
Unique NameCF836071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:63..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_THEAC (50S ribosomal protein L22P OS=Thermoplasma acidophilum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   57 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            M  YS E +      KAR  +  +  K++   AH +R +PL++AK  ++ V+    AIP+ R+   V       +R   G GR+PVK+AK    LL+N E+NAE KGL+ D L I HI  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:    4 MKGYSMEIEG--NHAKARIREADISLKDSVNIAHHLRGMPLSRAKEIIDAVINKTYAIPYFRYLDSVS------HRPGVGPGRYPVKAAKAFKQLLENVENNAEFKGLNTDNLVIKHIAANKGRMIKKYTPKAYGRAGANFKDLINLEIIVT 147          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            YS +  +P +  +A   DLR+  K   E    +R + L  A RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:    7 YSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_HALWD (50S ribosomal protein L22P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 44/150 (29.33%), Postives = 84/150 (56.00%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            + YS + D P  + +    D  +  K+++  A  I+ + +  A+ YL+DV+A +Q++PF +   GVG  +          GR+P K++K  L+L++N  SNA  +G D +A+ I H+  ++  +++ R  RA G  +P+ ++ C +EL +
Sbjct:    3 INYSVKAD-PETTARGMLRDRPISLKHSKAIAREIKGMTIADAESYLDDVIAQRQSVPFRQHNSGVGHRSDIDGWDA---GRYPEKASKAFLELIENVASNANEQGFDGNAMAIRHVAAHKVGERQGRKPRAFGSADPWNTTICDVELII 148          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_SULAC (50S ribosomal protein L22P OS=Sulfolobus acidocaldarius GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   93 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            K  KA   ++    ++      AIR + L +A+ +L +V+  K+A+PF R+  G    +    +     GR+P K+ K++L LL NAE+NA  KGLD+D L I HI  ++    +R   RA GR         HIE+ L
Sbjct:   15 KLAKAVIKNIDASVRDLYNVCKAIRGMNLKEAREFLNNVLEEKEALPFWRYSHGTSHRSNISRKWKVKSGRYPKKAIKYVLKLLDNAENNANSKGLDIDNLKIVHIAAHKGLVLKRYMTRAFGRSTRKYKYLSHIEVIL 153          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  102 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            +A+ ++L V  K++ E A  I+ +  T+AK YL DV+A K+AIPF RF   V    +  ++ P   GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   17 RAKANELPVSPKHSIEIARFIKNMTTTEAKAYLTDVVALKKAIPFKRFNRNVAHK-RGLSKWP--AGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_HALMA (50S ribosomal protein L22P OS=Haloarcula marismortui GN=rpl22p PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  ++  +Q+ R  RA GR + + S    +EL L
Sbjct:    3 ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELIL 148          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_AERPE (50S ribosomal protein L22P OS=Aeropyrum pernix GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            YS +  + ++  KA   ++ VH K   E A AI  + + +A+RYL  V+  ++A+PF R  G         ++     GR+PVK+A+++L LL N E+NA  K LDV+ L I H+  ++    +R   RA GR  P      HIE+
Sbjct:    6 YSVKLRDESEVAKAVLRNVPVHPKIMAEVARAISGMRVDEARRYLRAVIEKREAVPFRRAHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAAHKGITLKRWMPRAWGRATPRNRVHSHIEI 151          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_UNCMA (50S ribosomal protein L22P OS=Uncultured methanogenic archaeon RC-I GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            V Y+ E D P  + KA   ++ V  K+ +E    IR + L+ AK YL+DV+  K+++PF +    VG       RH +G   GR+PVK++  IL LLK+AE+NAE KGL+ + + I H    + +  +    RA GR   +      +E+ +
Sbjct:    4 VGYTAEFD-PATTAKAMAYEINVSPKHCQEICRQIRGMKLSAAKTYLQDVIDKKRSVPFKQHARNVGH-----KRHQSGWPSGRYPVKASTEILKLLKHAEANAEYKGLETENMRIIHSTSKKGRVIQGIMPRAMGRATAWNIELVTVEVVI 149          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_CENSY (50S ribosomal protein L22P OS=Cenarchaeum symbiosum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            YS E  +PT+  +A   + ++  K+ RE +  IR + + KA+ +L+ V+  K+A+PF RF   VG  +          GR+P KSA   + LL N ESNAE KG+D+D L I     ++    +R   RA GR  P  +   H+EL
Sbjct:    6 YSFEGYDPTRHVRASLREKQISHKHAREISLHIRGMTVEKARDFLQAVIEKKRAVPFRRFKRQVGHRSDPGVM----AGRYPEKSAAEFIKLLDNLESNAEYKGMDLDRLTIVGAVAHKGILIKRFIPRAMGRSTPKNNVLTHVEL 147          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_CALMQ (50S ribosomal protein L22P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 50/140 (35.71%), Postives = 68/140 (48.57%), Query Frame = 3
Query:  102 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ------GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            KARG + R+ +K   ETA AIR L + +A+ Y+E V   K  IP   F          K  H N         +WPVK A   L +L+N ESNA  +GL++D   I H   ++  + R    RA GR  P+     +IEL
Sbjct:   30 KARGFEFRISWKKAIETARAIRFLTIKQAEDYMEKVKDLKAPIPIKEFT--------RKQAHHNVPWDGWPVAKWPVKVADSFLQVLRNLESNASYRGLNIDNTVIVHASASRGMRIRNYMPRALGRATPWFQDTVNIEL 161          
The following BLAST results are available for this feature:
BLAST of CF836071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL22_THEAC9.408e-1633.5550S ribosomal protein L22P OS=Thermoplasma acidoph... [more]
RL22_PYRFU9.408e-1636.4950S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_HALWD2.096e-1529.3350S ribosomal protein L22P OS=Haloquadratum walsby... [more]
RL22_SULAC3.575e-1533.8150S ribosomal protein L22P OS=Sulfolobus acidocald... [more]
RL22_METMJ4.669e-1537.9650S ribosomal protein L22P OS=Methanoculleus maris... [more]
RL22_HALMA1.774e-1433.3350S ribosomal protein L22P OS=Haloarcula marismort... [more]
RL22_AERPE3.026e-1434.2550S ribosomal protein L22P OS=Aeropyrum pernix GN=... [more]
RL22_UNCMA3.952e-1434.2150S ribosomal protein L22P OS=Uncultured methanoge... [more]
RL22_CENSY3.952e-1435.6250S ribosomal protein L22P OS=Cenarchaeum symbiosu... [more]
RL22_CALMQ3.952e-1435.7150S ribosomal protein L22P OS=Caldivirga maquiling... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836071 ID=CF836071; Name=CF836071; organism=Citrus sinensis; type=EST; length=736bp
GACGGTAAAGCAAACCCACTTCACTGATACAGAGGCAGCATCCCTTATCA
GCCACCATGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTG
CAAAGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAA
CTGCCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTG
GAGGATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGG
TGGTGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGG
GACGATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAAT
GCTGAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACAT
TTCTCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACC
GTGCTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAG
TTGACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCA
GTTGGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCA
ATTGGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTT
TTTTACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCAT
ATTTTGTTTATTTCATATTAAGTCCAGTTTACTGTT
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