CF836071

Overview
NameCF836071
Unique NameCF836071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:63..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            Y K   +  K  KA   ++    ++      AIR + L  AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:    6 YPKLDIDENKLAKAVIKNVPASIRDLYNVCKAIRGMKLNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_PYRCJ (50S ribosomal protein L22P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   87 PTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            P +  KA   + R+ +K + E A  I+ + L +AK +LEDV+  K+ IP   F       A      P    +WPVK AK  L LL+N E+NA+ KGLDV+ L I H   ++  K      RA GR  P+     ++E+
Sbjct:   27 PEQIAKAYAPEQRMSWKKSVEVARFIKGMTLKQAKAWLEDVVKLKRPIPIKTFKKKQAHHATPWEGWP--VAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVNVEI 163          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METTP (50S ribosomal protein L22P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG-----QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 512
            + YS  P+   +  +A G +L +  K+ RE   AIR + +  A+R+L+DV+A K+A+PF R+   V         H +G      GR+P K+A+ +L +L+NA  NAE KGL+ + L I +    + +  R    RA GR  P       IE+ L+
Sbjct:    4 LNYSITPEG--RFARAMGVELPISPKHAREICRAIRGMKVEAAERFLQDVIALKRAVPFRRYNRNVP--------HRHGLVGWPAGRFPQKAARAVLRVLENAIGNAEYKGLEKERLVIGYANTKKGRTFRGWMPRAMGRATPKNQETVSIEMILT 149          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 3
Query:   63 KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            KY +   +  K  KA   D+    ++      AIR + L  AK +L  V+  K+A+PF R+  G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:    5 KYPQLDVDELKIAKAVIRDVPESIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_PICTO (50S ribosomal protein L22P OS=Picrophilus torridus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 43/141 (30.50%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   87 PTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            P +S +AR  ++ +  K+    AH ++ + L  AK  L++V+  K  +P+ R+   V       +R   G GR+PVK+A+    LL++  +NAE KGL  D+L I HI V++ +  ++ T +A+GR   +     ++E+ +
Sbjct:   10 PERSARARIREIDISLKDAVNVAHFLKGMDLDSAKNVLDNVIEKKVPVPYFRYMDSV------SHRKGIGPGRYPVKAARAFKKLLEDVSANAEFKGLS-DSLEIVHIAVSKGRMIKKYTPKAYGRAGAFFKDLVNLEVVV 143          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_NITMS (50S ribosomal protein L22P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 503
            Y+ +  + T+  ++   +  +  K+ RE A AI+ L + KA+ YL+ V+   +A+ F R+   VG  A          GR+P K+A+  + +L N ESNAE KG+D+D L I +  V++    +R   RA GR  P  +   H+EL
Sbjct:    6 YAFQNYDATRHVRSSVREKDMSHKHAREVAVAIKGLSIEKARDYLQAVVNKDRAVAFRRYKNQVGHKADPGMM----SGRYPQKTAREFIKVLDNLESNAEYKGMDLDRLKIVNATVHKGVIVKRFIPRAMGRATPKNNVLTHVEL 147          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METVS (50S ribosomal protein L22P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 3
Query:   66 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            Y  E D P+K+ KA G  LR+  K+  E    I  + L  A  +L  V+A +  +PF      V      K +     GR+P K+ + IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    6 YKVEAD-PSKTAKAMGRTLRISKKHALEICREINGMKLETAVSFLNRVLALETPVPFKVHNKDV---PHRKGKIGTHAGRFPQKATEEILKVLDNAKKNAEYKGLNTEKLRIKHISSNKGFIIKRFMPRAFGRASPKYQETIHIQVIL 149          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METB6 (50S ribosomal protein L22P OS=Methanoregula boonei (strain 6A8) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  102 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            + + ++L +  K++ E A  IR   +  A  YL DV+A K+AIPF  F     R    K   P     GR+PVK++K  + +L++ + NAE  GLD + L I H   N+ + Q+    RA GR +P +    +IE+ +
Sbjct:   17 RGKANELSISPKHSIEIADFIRHQRVNDALAYLADVVALKKAIPFRHF----NRNVAHKRGLPGNWDAGRYPVKASKAYIRILESIKKNAEYTGLDTENLEIIHASANRGRAQKAYFPRAMGRASPKVRETVNIEIVV 150          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METMP (50S ribosomal protein L22P OS=Methanococcus maripaludis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            +KY  E D P  + +A G  LR+  K+  E    +  + L  A  YL  V+A +  +PF      +      K +     GR+P K++  IL++L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    4 LKYKVEAD-PKNTARAMGRTLRISRKHAIELCRELSGMKLDAAVAYLNRVIALETPVPFKVHNKDL---PHRKGKIGTHSGRFPQKASLEILNVLDNAKKNAEQKGLNTEKLRIKHISSNRGFTIKRYMPRAFGRASPKNQETIHIQVIL 149          
BLAST of CF836071 vs. ExPASy Swiss-Prot
Match: RL22_METM7 (50S ribosomal protein L22P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 49/150 (32.67%), Postives = 73/150 (48.67%), Query Frame = 3
Query:   60 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 509
            +KY  E D P  + +A G  LR+  K+  E    +  + L  A  YL  V+A +  +PF      +      K +     GR+P K++  IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    4 LKYKVEAD-PKNTARAMGRTLRISRKHAIELCRELSGMKLDAAVAYLNRVIALETPVPFKVHNKDL---PHRKGKIGTHSGRFPQKASLEILQVLDNAKKNAEQKGLNTEKLRIKHISSNRGFTIKRYMPRAFGRASPKNQETIHIQVIL 149          
The following BLAST results are available for this feature:
BLAST of CF836071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL22_SULTO1.150e-1331.0850S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_PYRCJ1.150e-1335.2550S ribosomal protein L22P OS=Pyrobaculum calidifo... [more]
RL22_METTP1.150e-1333.3350S ribosomal protein L22P OS=Methanosaeta thermop... [more]
RL22_SULSO2.562e-1332.8950S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_PICTO3.346e-1330.5050S ribosomal protein L22P OS=Picrophilus torridus... [more]
RL22_NITMS7.454e-1332.8850S ribosomal protein L22P OS=Nitrosopumilus marit... [more]
RL22_METVS9.735e-1334.4650S ribosomal protein L22P OS=Methanococcus vannie... [more]
RL22_METB62.169e-1233.3350S ribosomal protein L22P OS=Methanoregula boonei... [more]
RL22_METMP4.832e-1232.6750S ribosomal protein L22P OS=Methanococcus maripa... [more]
RL22_METM76.310e-1232.6750S ribosomal protein L22P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836071 ID=CF836071; Name=CF836071; organism=Citrus sinensis; type=EST; length=736bp
GACGGTAAAGCAAACCCACTTCACTGATACAGAGGCAGCATCCCTTATCA
GCCACCATGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTG
CAAAGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAA
CTGCCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTG
GAGGATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGG
TGGTGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGG
GACGATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAAT
GCTGAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACAT
TTCTCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACC
GTGCTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAG
TTGACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCA
GTTGGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCA
ATTGGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTT
TTTTACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCAT
ATTTTGTTTATTTCATATTAAGTCCAGTTTACTGTT
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