CF836072

Overview
NameCF836072
Unique NameCF836072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 77/186 (41.40%), Postives = 107/186 (57.53%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K   IL R+ +  I  +I       L +     + +++L   E   FD   + YS+F SV++ +PT     + +++  E     +  + D+ YE E  E  GEIL  L     +  +  A+LENA SEQGARMSAMDS++RNAGEM+ + TL YNRTRQA IT ELIEIISGA AL
Sbjct:  114 KTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPT-----AQQIIPAEISPASESAQTDAAYEYEPEE--GEILAALLPKNLTVQILRALLENAASEQGARMSAMDSATRNAGEMIKKQTLVYNRTRQAMITKELIEIISGAEAL 292          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_MESSB (ATP synthase gamma chain OS=Mesorhizobium sp. (strain BNC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 73/185 (39.46%), Postives = 110/185 (59.46%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            ++ K + +G+K   +L RD  K +   I   +   + +     +A  ++   +  EFD   +IYS+F SV+S +PT   ++   + + E ES G + E   YE + G     IL +L     +  +F A+LENA  E GA+M+AMD+++RNAGEM+++LT+TYNR RQA IT ELIEIISGA AL
Sbjct:  113 RQVKIITVGKKGYDLLRRDFGKLVIDRIELREVKQIGFANADAIAKKVIGLFEAGEFDVCTLIYSRFKSVISQIPTEQQIIPAAVPQAEGESTGAIYE---YEPDAGA----ILADLIPRNIAVQIFRALLENAAGEMGAKMTAMDNATRNAGEMINKLTITYNRQRQAQITKELIEIISGAEAL 290          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_BOVIN (ATP synthase subunit gamma, mitochondrial OS=Bos taurus GN=ATP5C1 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.275e-26
Identity = 70/184 (38.04%), Postives = 114/184 (61.96%), Query Frame = -1
Query:  194 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 742
            KE K + +G+K ++IL R       +   E+ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S + +   AES     ++D+          ++L+N  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  126 KEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTIS-SAESMSIYDDIDA----------DVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_HUMAN (ATP synthase subunit gamma, mitochondrial OS=Homo sapiens GN=ATP5C1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.971e-26
Identity = 72/184 (39.13%), Postives = 111/184 (60.33%), Query Frame = -1
Query:  194 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 742
            KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   II++KF SV+S+      + S   V   A+S     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  126 KEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVA-SADSMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_MACFA (ATP synthase subunit gamma, mitochondrial OS=Macaca fascicularis GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.881e-26
Identity = 70/184 (38.04%), Postives = 112/184 (60.87%), Query Frame = -1
Query:  194 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 742
            KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   +I+++F SV+S+      + S   +   AES     ++D+          ++LQN  E+  + +++ ++ E++ SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  126 KEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSVIFNRFRSVISYKTEEKPIFSLNTIA-SAESMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESSTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ROSDO (ATP synthase gamma chain OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.620e-26
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = -1
Query:  197 KISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 784
            K++++  +   G  K+ K + +G+K +  L RD        + +TE+++  ++Y     +A D+L      EFD   I Y+KF +VVS +PT   ++  +  ++E E    L + +  E         IL +L     +  +F+A+LEN  SEQGARMSAMD+++RNAGEM++ LT+ +NR+RQA IT ELIEIISGA AL
Sbjct:  100 KLARAHAQKLQGEGKDVKILTVGKKGRDQLKRDLGSLFIGHVDLTEIKR--VSYVDAQGIAKDVLNRFDVGEFDVATIFYAKFVNVVSQIPTAQQIIPAKFEQQEGEEASTLFDYEPDE-------EAILADLLPRGVATQIFSALLENGASEQGARMSAMDNATRNAGEMIENLTIEFNRSRQAVITNELIEIISGAEAL 291          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_PONAB (ATP synthase subunit gamma, mitochondrial OS=Pongo abelii GN=ATP5C1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.620e-26
Identity = 72/183 (39.34%), Postives = 110/183 (60.11%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            KE   V +G+K + IL R       +   E+ + P  +   SV+A ++L +  EFD   II++KF SV+S+      + S   V   A+S     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA EM+D+LTLT+NRTRQA IT ELIEIISGA+AL
Sbjct:  126 KEVMLVGVGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVA-SADSMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SILPO (ATP synthase gamma chain OS=Silicibacter pomeroyi GN=atpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.475e-25
Identity = 77/185 (41.62%), Postives = 108/185 (58.38%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K +  + RD   ++   +       L Y     +A D+L      EFD   I Y+KF +VV+ LPT   ++ P   E E ES     E+  ++ E  E    IL +L     +  +F+A+LEN  SEQGARMSAMD+++RNAGEM+D+LT+ +NR+RQA IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGRDAMKRDFAANMVGHVDLSGIKALGYANAQDIARDVLGRFDAGEFDVATIFYAKFQNVVTQLPTAQQII-PAAFEAEGESD----EVALFDYEPSEEA--ILADLLPRGVATQIFSALLENGASEQGARMSAMDNATRNAGEMIDKLTIEFNRSRQAVITNELIEIISGAEAL 291          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RHILW (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.515e-25
Identity = 72/182 (39.56%), Postives = 102/182 (56.04%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K+   ++  E A  I+ R   +D++ I  E      N  Q+     D+    EFD   + YS+F SV+S +PT   ++       +AE     G +  YE +       IL++L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  123 KKGYDILRREYASLIIERKELRDVKRIGFE------NADQIGKRIIDMYAAGEFDVCTLFYSEFKSVISQIPTAQQLIPASTGAVQAEDAAHAGAVYEYEPD----PASILEDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.515e-25
Identity = 71/184 (38.59%), Postives = 112/184 (60.87%), Query Frame = -1
Query:  194 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 742
            KE   V +GEK K+IL R       +   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S   V   AE+     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA +M+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  101 KEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSFSTVVA-AENMSIYDDIDA----------DVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 273          
The following BLAST results are available for this feature:
BLAST of CF836072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_METNO1.334e-2641.40ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_MESSB1.334e-2639.46ATP synthase gamma chain OS=Mesorhizobium sp. (str... [more]
ATPG_BOVIN2.275e-2638.04ATP synthase subunit gamma, mitochondrial OS=Bos t... [more]
ATPG_HUMAN2.971e-2639.13ATP synthase subunit gamma, mitochondrial OS=Homo ... [more]
ATPG_MACFA3.881e-2638.04ATP synthase subunit gamma, mitochondrial OS=Macac... [more]
ATPG_ROSDO6.620e-2637.81ATP synthase gamma chain OS=Roseobacter denitrific... [more]
ATPG_PONAB6.620e-2639.34ATP synthase subunit gamma, mitochondrial OS=Pongo... [more]
ATPG_SILPO1.475e-2541.62ATP synthase gamma chain OS=Silicibacter pomeroyi ... [more]
ATPG_RHILW2.515e-2539.56ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_RAT2.515e-2538.59ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836072 ID=CF836072; Name=CF836072; organism=Citrus sinensis; type=EST; length=787bp
AACTATATTTCCATATAACGCAGAGTATAATGTGTTAATTCCCCAAGGTT
TTACCCCTTGGAGAGATTATGTGGAGTAGCTCAACAAAAACCTCTTATGA
AAGTACCACATTTGAAGTTTGAACAAAGCCTCCACCAAGGATTTATTTCG
TCACTGTCAAAAAAAGTGAGCACTGTCGCTTTTGTAATCAGCCTTCCAGT
GCTGATGCTCCAGATATAATCTCAATCAACTCGGGGGTGATAGATGCTTG
ACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAAGCATTTCTCCTGCAT
TTCTGCTTGAGCTATCCATGGCAGACATCCTTGCCCCTTGCTCACTGCAG
GCATTCTCCAACACCGCATTGAACATGACACAAGAGAATTGGAACTCAGC
CAGATTTTGAAGTATTTCACCCTTTGTTTCACCGCCTTCAATTTCATAGG
AGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCTTCTCTCTCCACAAGC
TCAGGCGATAATACAGTTGCCATTGTCGGCAGAAAGGAGACCACGGAATG
GAACTTGCTATAGATAATCCTCAAAGCATCAAATTCTACATTCTTTAAGA
TATCATCTGCAAGAACGGAAACCTGGGTATAATTGAGAGGATTTTTCTGT
AACTCAGTTATGATGAGTTCAATATCTTTCTTTGAGTCACGTACTAATAT
TGCCTTTGCCTTCTCTCCCAAGATGACGTATTTGTTTTCTTTGTCGGGAC
CAGAATTCAACTTGTGCAAACTCTTGCTTATCTTAAC
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