CF836072

Overview
NameCF836072
Unique NameCF836072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:508..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RHIME (ATP synthase gamma chain OS=Rhizobium meliloti GN=atpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 75/185 (40.54%), Postives = 104/185 (56.22%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K   +L RD    I   + + E++K    N  ++     ++    EFD   + YS+F SV+S +PT   ++     E  A  G     +  YE E G     IL +L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+D+LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  114 KTVKIICVGKKGFDMLRRDFASLIIDRVDLREVKKIGFENADRIGHKVIELFDKGEFDVCTLFYSEFKSVISQIPTAQQLIPASAGEVAAAEGEGASAIYEYEPEAGA----ILSDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMIDKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_PARL1 (ATP synthase gamma chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 80/188 (42.55%), Postives = 105/188 (55.85%), Query Frame = -1
Query:  197 GPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQ---VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 751
            G  K  K + +G K +  L RD    I           + + Q   +S    D+ +  EFD   I YSKF +VVS +PT A  L P  V  +A     LG    YE E  E  GEIL+++     S  +F A+LEN   E GA+MSAMD+++RNAG+M+ +L +TYNR+RQA IT ELIEIISGA AL
Sbjct:  111 GEGKTVKILTVGRKGRDALKRDHASRIVKSYEFTGIRHIGFEQAEDISRTVIDLFEAGEFDVATIFYSKFVNVVSQIPT-AQQLIPASVPADAGGSVDLGGA-VYEYEPDE--GEILKDILPRNLSVQIFRALLENVAGEFGAKMSAMDNATRNAGDMIKKLNITYNRSRQAMITKELIEIISGAEAL 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 75/185 (40.54%), Postives = 109/185 (58.92%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++ P   E +A++   L     Y+ E  E    IL +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII-PASFEGDADADATL-----YDYEPSEEA--ILADLLPRGVATQIFAALLENGASEQGARMSAMDNATRNAGDMIERLTIEYNRSRQAVITNELIEIISGAEAL 290          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ACICJ (ATP synthase gamma chain OS=Acidiphilium cryptum (strain JF-5) GN=atpG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 67/185 (36.22%), Postives = 109/185 (58.92%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K+ +   +G K +    RD ++ I      + K  + +     +A+ I+    + +FD   +++++F SV+S +P+   ++     +   ++ G       YEIE  +  G +L  L     +  +++A+LE+A  EQGARM+AMD+++RNAGEM++RLTL YNRTRQA+IT ELIEIISGA AL
Sbjct:  114 KQVRLFTVGRKGRDFFRRDMREKIIGEANFVGKKTIEFADAEAIANQIIAAFNDGKFDVCTLMFNRFVSVMSQVPSETPLIPASAGQAANDNAGSDQPAGDYEIEPDD--GTLLDRLLPRNLAVQIYSALLESAAGEQGARMTAMDNATRNAGEMINRLTLNYNRTRQANITKELIEIISGAEAL 296          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_MOUSE (ATP synthase subunit gamma, mitochondrial OS=Mus musculus GN=Atp5c1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.604e-25
Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = -1
Query:  194 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 742
            KE   V +GEK K IL R       +   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+      + S   +   AE+     ++D+          ++LQN  E+  + +++ ++ E+  SEQ ARM+AMD++S+NA +M+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct:  126 KEVMIVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSLNTIAT-AETMSIYDDIDA----------DVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RHILO (ATP synthase gamma chain OS=Rhizobium loti GN=atpG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 72/185 (38.92%), Postives = 103/185 (55.68%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K+ K + +G+K   IL RD    I   +   +   L +     +A  ++       FD   + YS+F SV+S +PT   ++   +    A +      +  YE E     GEIL +L     S  +F A+LENA  E GA+MSAMD+++RNAGEM+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  114 KQVKIICVGKKGFDILRRDYASMILDRVDLREVKTLGFVNADAIAKKVIHLFNEGAFDICTLFYSQFKSVISQVPTAQQIIPAGVASAPAAAVDGGNAVYEYEPE----PGEILSDLIPRNISVQVFRALLENAAGEMGAKMSAMDNATRNAGEMINKLSITYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SILST (ATP synthase gamma chain OS=Silicibacter sp. (strain TM1040) GN=atpG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 76/187 (40.64%), Postives = 109/187 (58.29%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K + +L R+        + +TE+++  + Y     +A DIL      EFD   I YSKF +VV+ +PT   ++  E    +AE       +  YE     ++  IL +L     +  +F  +LEN  SEQGARMSAMD+++RNAGEM+D+LT+ YNR+RQA IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGRDVLKREFGDLFVGHVDLTEVKR--VGYVDAQGIAKDILARFDAGEFDVATIFYSKFQNVVTQIPTAQQIIPAEF---DAEGAEATSGVVDYE----PSEEAILADLLPRGVATQIFAGLLENGASEQGARMSAMDNATRNAGEMIDKLTIEYNRSRQAVITNELIEIISGAEAL 291          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS5 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 74/185 (40.00%), Postives = 109/185 (58.92%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+ P + E E    G++  L  YE     ++  +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDVLDRFDKGEFDVATIFFARFQSVISQIPTAQQVI-PAVFEGE----GEVNSLYDYE----PSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIQYNRSRQAAITKELIEIISGAEAL 289          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RHIE6 (ATP synthase gamma chain OS=Rhizobium etli (strain CIAT 652) GN=atpG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 71/182 (39.01%), Postives = 103/182 (56.59%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K+   ++  E A  I+ R   ++++ I  E      N  Q+     ++ +  EFD   + YS+F SV+S +PT   ++  +  E  AE     G +  YE +       IL +L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  123 KKGYDILRREFASLIVERKELREVKKIGFE------NADQIGKRIIEMFEAGEFDVCTLFYSEFKSVISQVPTAQQLIPAKAPEAVAEDADHAGAVYEYEPD----PAAILDDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RHIL3 (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.630e-24
Identity = 70/182 (38.46%), Postives = 102/182 (56.04%), Query Frame = -1
Query:  197 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 742
            K+   ++  E A  I+ R   +D++ +  E      N  Q+     ++    EFD   + YS+F SV+S +PT   ++       +AE     G +  YE +       IL++L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  123 KKGYDILRREFASLIIERKELRDVKRVGFE------NADQIGKRIIEMYAAGEFDVCTLFYSEFKSVISQIPTAQRLIPASAEAVQAEDAEHAGAVYEYEPD----PASILEDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
The following BLAST results are available for this feature:
BLAST of CF836072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_RHIME3.285e-2540.54ATP synthase gamma chain OS=Rhizobium meliloti GN=... [more]
ATPG_PARL14.291e-2542.55ATP synthase gamma chain OS=Parvibaculum lavamenti... [more]
ATPG_DINSH4.291e-2540.54ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_ACICJ4.291e-2536.22ATP synthase gamma chain OS=Acidiphilium cryptum (... [more]
ATPG_MOUSE5.604e-2538.04ATP synthase subunit gamma, mitochondrial OS=Mus m... [more]
ATPG_RHILO7.319e-2538.92ATP synthase gamma chain OS=Rhizobium loti GN=atpG... [more]
ATPG_SILST9.559e-2540.64ATP synthase gamma chain OS=Silicibacter sp. (stra... [more]
ATPG_RHOS51.248e-2440.00ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHIE61.248e-2439.01ATP synthase gamma chain OS=Rhizobium etli (strain... [more]
ATPG_RHIL31.630e-2438.46ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836072 ID=CF836072; Name=CF836072; organism=Citrus sinensis; type=EST; length=787bp
AACTATATTTCCATATAACGCAGAGTATAATGTGTTAATTCCCCAAGGTT
TTACCCCTTGGAGAGATTATGTGGAGTAGCTCAACAAAAACCTCTTATGA
AAGTACCACATTTGAAGTTTGAACAAAGCCTCCACCAAGGATTTATTTCG
TCACTGTCAAAAAAAGTGAGCACTGTCGCTTTTGTAATCAGCCTTCCAGT
GCTGATGCTCCAGATATAATCTCAATCAACTCGGGGGTGATAGATGCTTG
ACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAAGCATTTCTCCTGCAT
TTCTGCTTGAGCTATCCATGGCAGACATCCTTGCCCCTTGCTCACTGCAG
GCATTCTCCAACACCGCATTGAACATGACACAAGAGAATTGGAACTCAGC
CAGATTTTGAAGTATTTCACCCTTTGTTTCACCGCCTTCAATTTCATAGG
AGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCTTCTCTCTCCACAAGC
TCAGGCGATAATACAGTTGCCATTGTCGGCAGAAAGGAGACCACGGAATG
GAACTTGCTATAGATAATCCTCAAAGCATCAAATTCTACATTCTTTAAGA
TATCATCTGCAAGAACGGAAACCTGGGTATAATTGAGAGGATTTTTCTGT
AACTCAGTTATGATGAGTTCAATATCTTTCTTTGAGTCACGTACTAATAT
TGCCTTTGCCTTCTCTCCCAAGATGACGTATTTGTTTTCTTTGTCGGGAC
CAGAATTCAACTTGTGCAAACTCTTGCTTATCTTAAC
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