CF836072

Overview
NameCF836072
Unique NameCF836072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ACISJ (ATP synthase gamma chain OS=Acidovorax sp. (strain JS42) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.105e-12
Identity = 49/142 (34.51%), Postives = 79/142 (55.63%), Query Frame = -1
Query:  197 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 622
            V VL D   +  + +A+ + Y+KF + +     +  +L     + +A+  G  G    YE +      E+L    E     +++ AV EN  SEQ ARM AM +++ NAG +++ L L YN+TRQA+IT EL EI++GA+A+
Sbjct:  153 VKVLLDAYAEG-KINAVYLSYTKFINTMKQESVVEQLLPLSSEQMQAQKTGH-GWDYIYEPDAQSVIDELLVRYVE----SLIYQAVAENMASEQSARMVAMKAATDNAGNVINELKLVYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS9 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9902) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 58/208 (27.88%), Postives = 104/208 (50.00%), Query Frame = -1
Query:  191 KYVILGEKAKAILVRDSKKD--IELIITELQKNPLNYTQVSVLADDILKNVEF-----DALRIIYSKFHSVVSFLPTMATVLS---PELVEREAESGGKLGELDSYEIEGG-----------------ETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALEG 733
            K V++G KA +     S +D  I+  IT L++ P    + + +A D+L   EF     D + ++++KF ++VS  P + T+L     ++ + E E      +     +E G                 ++  ++L  L        +   + E+A SE  +RM+AM+++S NA E+   LTL YN+ RQA+IT E++E++ G++A  G
Sbjct:  116 KLVVIGSKAISYF---SNRDYPIQAKITGLEQVP-TADEANTIATDML--AEFMAAGTDRVEMVFTKFINLVSCKPVLQTLLPLDPQDIADPEDEIFNLTTDQGRLTVEPGTSSANTAPKIPSDIVFEQSPDQLLNALLPLYLQNQLLRCLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAAAGG 317          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SODGM (ATP synthase gamma chain OS=Sodalis glossinidius (strain morsitans) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 59/192 (30.73%), Postives = 94/192 (48.96%), Query Frame = -1
Query:  197 SGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPL-----NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 754
            +G   E +  ++G KA +       K +  + T +  NP+        +V + A D       D L I+ +KF + +S +P +  +L     E   E+  K+   D  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQ SIT EL EI+SGA+A+
Sbjct:  107 NGKGVETELALIGSKAVSFFNSVGSKVVAQV-TGMGDNPMLSELIGPVKVMLQAYD---EGRLDKLYIVSNKFVNTMSQVPQILQILPLPPAE---EADLKIKSWDYLYEPDPKTLLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQTSITQELTEIVSGAAAV 287          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SHESR (ATP synthase gamma chain OS=Shewanella sp. (strain MR-7) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D     + D L ++++KF + ++  P +  +L P     + E   +   +  YE +       +L    E Q    ++  V+EN  SEQ ARM AM +++ NAG ++D L L YN+ RQA+IT EL EI+SGASA+
Sbjct:  158 DAYNEGKLDRLYVVFNKFVNTMTQTPVIEQLL-PLPKSEDDEVAHRWDYI--YEPDPKALLDTLLVRYVESQ----VYQGVVENIASEQAARMVAMKAATDNAGTLIDDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SHESM (ATP synthase gamma chain OS=Shewanella sp. (strain MR-4) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D     + D L ++++KF + ++  P +  +L P     + E   +   +  YE +       +L    E Q    ++  V+EN  SEQ ARM AM +++ NAG ++D L L YN+ RQA+IT EL EI+SGASA+
Sbjct:  158 DAYNEGKLDRLYVVFNKFVNTMTQTPVIEQLL-PLPKSEDDEVAHRWDYI--YEPDPKALLDTLLVRYVESQ----VYQGVVENIASEQAARMVAMKAATDNAGTLIDDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_SHESA (ATP synthase gamma chain OS=Shewanella sp. (strain ANA-3) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D     + D L ++++KF + ++  P +  +L P     + E   +   +  YE +       +L    E Q    ++  V+EN  SEQ ARM AM +++ NAG ++D L L YN+ RQA+IT EL EI+SGASA+
Sbjct:  158 DAYNEGKLDRLYVVFNKFVNTMTQTPVIEQLL-PLPKSEDDEVAHRWDYI--YEPDPKALLDTLLVRYVESQ----VYQGVVENIASEQAARMVAMKAATDNAGTLIDDLQLVYNKARQAAITQELSEIVSGASAV 286          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_RUBXD (ATP synthase gamma chain OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = -1
Query:  197 ILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 601
            + +  E D + ++Y++F +     P +  +L       E   GG +       I   +T   IL+ L       +++ A+LE+A  E GARM+AM +++ NA E++D LTL  N+ RQA IT E+ EI +GA AL
Sbjct:  156 LFEREEADEVYLVYNRFVNPAVQRPVVVRLLPAAPEGGEEGEGGTVSGAPFDFIPDADT---ILRRLIPQYVETLVWQALLESAAGEHGARMTAMKNATDNANELVDTLTLQMNKARQAQITREISEIAAGAEAL 287          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_PSEF5 (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = -1
Query:  197 ILGEKAKAILVRDSKKDIELIITELQKNP-LN--YTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 724
            ++G K  A   R+   ++   I+ L + P +N     V V+ D  L+    D L ++ +KF + ++  PT+      +L+  EA    +L     Y  E      E+L  L        ++ AV+EN  +EQ ARM AM +++ NAG+++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:  117 VVGSKGAAFF-RNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEG-RIDRLSVVSNKFINTMTQQPTVE-----QLIPLEATPDQELKHHWDYLYEPDAK--ELLDGLMVRYVESQVYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_NITSB (ATP synthase gamma chain OS=Nitratiruptor sp. (strain SB155-2) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  194 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 580
            D + +I++ + ++++       +L  ++ +   E  G + E++  E E      ++L++L        M+ A++++  +E  ARM AMD+++ NA EM+  LT++YN+ RQ SIT ELIEIISG  A++
Sbjct:  172 DKVILIHNGYKNMITQEMKAIQLLPIDISKYTEEVDGSMLEMEPDESE------KVLESLLNKYIEFNMYYALIDSLAAEHSARMQAMDAATNNAKEMVRSLTISYNKARQESITTELIEIISGMEAMK 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSW (ATP synthase gamma chain OS=Geobacillus sp. (strain WCH70) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 57/199 (28.64%), Postives = 104/199 (52.26%), Query Frame = -1
Query:  194 ISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP--LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLS-PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASALE 781
            + +++ + +  PD E   +++G    +   + +   I L IT L   P   +  +++  A  +  +  FD L + Y+ + S +    T   +L   +LV+ +  +        +YE E  +   EIL  L       +++ A+L+   SE  ARM+AM +++ NA E++  LTL+YNR RQA+IT E+ EI++GA+AL+
Sbjct:   99 VYQTIQQRHQSPD-EYAIIVIGRVGLSFFKKRNFPVI-LNITGLPDQPSFADIKEIANKAVGLFADGTFDELYMYYNHYVSAIQQEVTERKLLPLTDLVDNKQRT--------TYEFEPSQE--EILDVLLPQYAESLIYGALLDAKASEHAARMTAMKNATDNAHELIRTLTLSYNRARQAAITQEITEIVAGANALQ 285          
The following BLAST results are available for this feature:
BLAST of CF836072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_ACISJ7.105e-1234.51ATP synthase gamma chain OS=Acidovorax sp. (strain... [more]
ATPG_SYNS99.280e-1227.88ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SODGM9.280e-1230.73ATP synthase gamma chain OS=Sodalis glossinidius (... [more]
ATPG_SHESR9.280e-1234.56ATP synthase gamma chain OS=Shewanella sp. (strain... [more]
ATPG_SHESM9.280e-1234.56ATP synthase gamma chain OS=Shewanella sp. (strain... [more]
ATPG_SHESA9.280e-1234.56ATP synthase gamma chain OS=Shewanella sp. (strain... [more]
ATPG_RUBXD9.280e-1233.33ATP synthase gamma chain OS=Rubrobacter xylanophil... [more]
ATPG_PSEF59.280e-1231.28ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_NITSB9.280e-1231.78ATP synthase gamma chain OS=Nitratiruptor sp. (str... [more]
ATPG_GEOSW9.280e-1228.64ATP synthase gamma chain OS=Geobacillus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836072 ID=CF836072; Name=CF836072; organism=Citrus sinensis; type=EST; length=787bp
AACTATATTTCCATATAACGCAGAGTATAATGTGTTAATTCCCCAAGGTT
TTACCCCTTGGAGAGATTATGTGGAGTAGCTCAACAAAAACCTCTTATGA
AAGTACCACATTTGAAGTTTGAACAAAGCCTCCACCAAGGATTTATTTCG
TCACTGTCAAAAAAAGTGAGCACTGTCGCTTTTGTAATCAGCCTTCCAGT
GCTGATGCTCCAGATATAATCTCAATCAACTCGGGGGTGATAGATGCTTG
ACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAAGCATTTCTCCTGCAT
TTCTGCTTGAGCTATCCATGGCAGACATCCTTGCCCCTTGCTCACTGCAG
GCATTCTCCAACACCGCATTGAACATGACACAAGAGAATTGGAACTCAGC
CAGATTTTGAAGTATTTCACCCTTTGTTTCACCGCCTTCAATTTCATAGG
AGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCTTCTCTCTCCACAAGC
TCAGGCGATAATACAGTTGCCATTGTCGGCAGAAAGGAGACCACGGAATG
GAACTTGCTATAGATAATCCTCAAAGCATCAAATTCTACATTCTTTAAGA
TATCATCTGCAAGAACGGAAACCTGGGTATAATTGAGAGGATTTTTCTGT
AACTCAGTTATGATGAGTTCAATATCTTTCTTTGAGTCACGTACTAATAT
TGCCTTTGCCTTCTCTCCCAAGATGACGTATTTGTTTTCTTTGTCGGGAC
CAGAATTCAACTTGTGCAAACTCTTGCTTATCTTAAC
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