CF836072

Overview
NameCF836072
Unique NameCF836072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECOHS (ATP synthase gamma chain OS=Escherichia coli O9:H4 (strain HS) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECODH (ATP synthase gamma chain OS=Escherichia coli (strain K12 / DH10B) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECOBW (ATP synthase gamma chain OS=Escherichia coli (strain K12 / BW2952) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO8A (ATP synthase gamma chain OS=Escherichia coli O8 (strain IAI1) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO81 (ATP synthase gamma chain OS=Escherichia coli O81 (strain ED1a) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO7I (ATP synthase gamma chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO5E (ATP synthase gamma chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO57 (ATP synthase gamma chain OS=Escherichia coli O157:H7 GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO55 (ATP synthase gamma chain OS=Escherichia coli (strain 55989 / EAEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
[Close]
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_ECO45 (ATP synthase gamma chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.212e-11
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = -1 
Query:  197 DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 580
            D L I+ +KF + +S +PT++ +L     + +         L  YE +       +L+   E Q    ++  V+EN  SEQ ARM AM +++ N G ++  L L YN+ RQASIT EL EI+SGA+A+
Sbjct:  166 DKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYL--YEPDPKALLDTLLRRYVESQ----VYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV 287
The following BLAST results are available for this feature:
BLAST of CF836072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_ECOHS1.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O9:H4... [more]
ATPG_ECODH1.212e-1135.94ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECOBW1.212e-1135.94ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECO8A1.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O8 (s... [more]
ATPG_ECO811.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O81 (... [more]
ATPG_ECO7I1.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O7:K1... [more]
ATPG_ECO5E1.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O157:... [more]
ATPG_ECO571.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O157:... [more]
ATPG_ECO551.212e-1135.94ATP synthase gamma chain OS=Escherichia coli (stra... [more]
ATPG_ECO451.212e-1135.94ATP synthase gamma chain OS=Escherichia coli O45:K... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836072 ID=CF836072; Name=CF836072; organism=Citrus sinensis; type=EST; length=787bp
AACTATATTTCCATATAACGCAGAGTATAATGTGTTAATTCCCCAAGGTT
TTACCCCTTGGAGAGATTATGTGGAGTAGCTCAACAAAAACCTCTTATGA
AAGTACCACATTTGAAGTTTGAACAAAGCCTCCACCAAGGATTTATTTCG
TCACTGTCAAAAAAAGTGAGCACTGTCGCTTTTGTAATCAGCCTTCCAGT
GCTGATGCTCCAGATATAATCTCAATCAACTCGGGGGTGATAGATGCTTG
ACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAAGCATTTCTCCTGCAT
TTCTGCTTGAGCTATCCATGGCAGACATCCTTGCCCCTTGCTCACTGCAG
GCATTCTCCAACACCGCATTGAACATGACACAAGAGAATTGGAACTCAGC
CAGATTTTGAAGTATTTCACCCTTTGTTTCACCGCCTTCAATTTCATAGG
AGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCTTCTCTCTCCACAAGC
TCAGGCGATAATACAGTTGCCATTGTCGGCAGAAAGGAGACCACGGAATG
GAACTTGCTATAGATAATCCTCAAAGCATCAAATTCTACATTCTTTAAGA
TATCATCTGCAAGAACGGAAACCTGGGTATAATTGAGAGGATTTTTCTGT
AACTCAGTTATGATGAGTTCAATATCTTTCTTTGAGTCACGTACTAATAT
TGCCTTTGCCTTCTCTCCCAAGATGACGTATTTGTTTTCTTTGTCGGGAC
CAGAATTCAACTTGTGCAAACTCTTGCTTATCTTAAC
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