CF836072

Overview
NameCF836072
Unique NameCF836072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1151 contig Csv1_Contig1151:508..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_FRATN (ATP synthase gamma chain OS=Francisella tularensis subsp. novicida (strain U112) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  197 EFDALRIIYSKFHSVVSFLPTMATVL------SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 586
            E D L +  ++F S +   P + T+L      S E ++   E   K G  D       E   E+L  L        +  A+LENA  EQ ARM AM +++ NA +++D+L L YN+ RQA IT EL EI SGA+A+
Sbjct:  167 EIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATK-GHWDYIYERDIE---EVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_FRATM (ATP synthase gamma chain OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  197 EFDALRIIYSKFHSVVSFLPTMATVL------SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 586
            E D L +  ++F S +   P + T+L      S E ++   E   K G  D       E   E+L  L        +  A+LENA  EQ ARM AM +++ NA +++D+L L YN+ RQA IT EL EI SGA+A+
Sbjct:  167 EIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATK-GHWDYIYERDIE---EVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_FRATH (ATP synthase gamma chain OS=Francisella tularensis subsp. holarctica (strain LVS) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  197 EFDALRIIYSKFHSVVSFLPTMATVL------SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 586
            E D L +  ++F S +   P + T+L      S E ++   E   K G  D       E   E+L  L        +  A+LENA  EQ ARM AM +++ NA +++D+L L YN+ RQA IT EL EI SGA+A+
Sbjct:  167 EIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATK-GHWDYIYERDIE---EVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_FRATF (ATP synthase gamma chain OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=atpG PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  197 EFDALRIIYSKFHSVVSFLPTMATVL------SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 586
            E D L +  ++F S +   P + T+L      S E ++   E   K G  D       E   E+L  L        +  A+LENA  EQ ARM AM +++ NA +++D+L L YN+ RQA IT EL EI SGA+A+
Sbjct:  167 EIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATK-GHWDYIYERDIE---EVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_FRAT1 (ATP synthase gamma chain OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 51/137 (37.23%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  197 EFDALRIIYSKFHSVVSFLPTMATVL------SPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 586
            E D L +  ++F S +   P + T+L      S E ++   E   K G  D  YE +  E    +     E Q       A+LENA  EQ ARM AM +++ NA +++D+L L YN+ RQA IT EL EI SGA+A+
Sbjct:  167 EIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFSAEEIKANKEKATK-GHWDYIYERDIEEVLNALFIRYIEAQVR----GAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEICSGAAAV 298          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_CHLAD (ATP synthase gamma chain OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = -1
Query:  197 VSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 622
            V++ A    ++ ++D L IIYS+F + +   P +  +L  E      +    +    +YE    +    IL    E Q    ++ AVLE+  SE  ARM AM +++ NA +++  LTL++N+ RQA+IT E+ EI SGA+AL
Sbjct:  155 VAISAISGFQSGKYDELYIIYSEFINTLVQRPAIKQLLPVE----SPDISTTINVDYTYEPSEEDVLNSILPRYVETQ----IYQAVLESIASEHSARMVAMRNATNNAKDLVRDLTLSFNKARQAAITKEVSEIASGAAAL 288          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_BURXL (ATP synthase gamma chain OS=Burkholderia xenovorans (strain LB400) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAESGGKLGELDSY--EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D+    +  A+ + Y++F + +   P +  +L  S +  ER+ E G        Y  E +      E+L    E     +++ AV EN  SEQ ARM AM ++S NA  +++ L L YN++RQA+IT EL EI+ GA+A+
Sbjct:  159 DLYSEGKVSAVYLAYTRFVNTMKQEPVIEQLLPLSADQFERKEEDGTTPSTQWDYIYEPDAQAVVDELLVRYVE----ALVYQAVAENMASEQSARMVAMKAASDNAKTVINELQLVYNKSRQAAITKELSEIVGGAAAV 294          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_BURS3 (ATP synthase gamma chain OS=Burkholderia sp. (strain 383) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D+    +  A+ I Y++F + +     +  +L       EA+ G      D  YE +      E+L    E     +++ AV EN  SEQ ARM AM ++S NA  ++  L L YN++RQA+IT EL EI+ GA+A+
Sbjct:  159 DLYSEGKLSAVYIAYTRFVNTMKQEAVIEQLLPLSSEHFEADDGTPATSWDYIYEPDAQAVVDELLVRYVE----ALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLVYNKSRQAAITKELSEIVGGAAAV 291          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_BURCM (ATP synthase gamma chain OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D+    +  A+ I Y++F + +     +  +L       EA+ G      D  YE +      E+L    E     +++ AV EN  SEQ ARM AM ++S NA  ++  L L YN++RQA+IT EL EI+ GA+A+
Sbjct:  159 DLYSEGKLSAVYIAYTRFVNTMKQEAVIEQLLPLSSEHFEADDGTPATSWDYIYEPDAQAVVDELLVRYVE----ALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLVYNKSRQAAITKELSEIVGGAAAV 291          
BLAST of CF836072 vs. ExPASy Swiss-Prot
Match: ATPG_BURA4 (ATP synthase gamma chain OS=Burkholderia ambifaria (strain MC40-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = -1
Query:  197 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITPELIEIISGASAL 604
            D+    +  A+ I Y++F + +     +  +L       EA+ G      D  YE +      E+L    E     +++ AV EN  SEQ ARM AM ++S NA  ++  L L YN++RQA+IT EL EI+ GA+A+
Sbjct:  159 DLYSEGKLSAVYIAYTRFVNTMKQEAVIEQLLPLSSEHFEADDGTPATSWDYIYEPDAQAVVDELLVRYVE----ALVYQAVAENMASEQSARMVAMKAASDNAKTVISELQLVYNKSRQAAITKELSEIVGGAAAV 291          
The following BLAST results are available for this feature:
BLAST of CF836072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_FRATN3.526e-1136.76ATP synthase gamma chain OS=Francisella tularensis... [more]
ATPG_FRATM3.526e-1136.76ATP synthase gamma chain OS=Francisella tularensis... [more]
ATPG_FRATH3.526e-1136.76ATP synthase gamma chain OS=Francisella tularensis... [more]
ATPG_FRATF3.526e-1136.76ATP synthase gamma chain OS=Francisella tularensis... [more]
ATPG_FRAT13.526e-1137.23ATP synthase gamma chain OS=Francisella tularensis... [more]
ATPG_CHLAD3.526e-1133.80ATP synthase gamma chain OS=Chloroflexus aggregans... [more]
ATPG_BURXL3.526e-1133.57ATP synthase gamma chain OS=Burkholderia xenovoran... [more]
ATPG_BURS33.526e-1133.58ATP synthase gamma chain OS=Burkholderia sp. (stra... [more]
ATPG_BURCM3.526e-1133.58ATP synthase gamma chain OS=Burkholderia ambifaria... [more]
ATPG_BURA43.526e-1133.58ATP synthase gamma chain OS=Burkholderia ambifaria... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836072 ID=CF836072; Name=CF836072; organism=Citrus sinensis; type=EST; length=787bp
AACTATATTTCCATATAACGCAGAGTATAATGTGTTAATTCCCCAAGGTT
TTACCCCTTGGAGAGATTATGTGGAGTAGCTCAACAAAAACCTCTTATGA
AAGTACCACATTTGAAGTTTGAACAAAGCCTCCACCAAGGATTTATTTCG
TCACTGTCAAAAAAAGTGAGCACTGTCGCTTTTGTAATCAGCCTTCCAGT
GCTGATGCTCCAGATATAATCTCAATCAACTCGGGGGTGATAGATGCTTG
ACGAGTTCTGTTATAAGTAAGAGTGAGGCGATCAAGCATTTCTCCTGCAT
TTCTGCTTGAGCTATCCATGGCAGACATCCTTGCCCCTTGCTCACTGCAG
GCATTCTCCAACACCGCATTGAACATGACACAAGAGAATTGGAACTCAGC
CAGATTTTGAAGTATTTCACCCTTTGTTTCACCGCCTTCAATTTCATAGG
AGTCTAGCTCACCAAGCTTTCCCCCAGATTCGGCTTCTCTCTCCACAAGC
TCAGGCGATAATACAGTTGCCATTGTCGGCAGAAAGGAGACCACGGAATG
GAACTTGCTATAGATAATCCTCAAAGCATCAAATTCTACATTCTTTAAGA
TATCATCTGCAAGAACGGAAACCTGGGTATAATTGAGAGGATTTTTCTGT
AACTCAGTTATGATGAGTTCAATATCTTTCTTTGAGTCACGTACTAATAT
TGCCTTTGCCTTCTCTCCCAAGATGACGTATTTGTTTTCTTTGTCGGGAC
CAGAATTCAACTTGTGCAAACTCTTGCTTATCTTAAC
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