CF836073

Overview
NameCF836073
Unique NameCF836073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_RHORT (ATP synthase gamma chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDA-------------KKNV--IVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI 624
            S + +R+R+ SVK+ QKIT AMKMVAAS+LR  Q  AE +R   Q    +LG+     A             K NV  IV +++++GLCGG N + ++ +++L +      K  K + +G+K +  L R+  K I
Sbjct:    3 SLKDLRSRITSVKSTQKITSAMKMVAASRLRRAQDTAEAARPYTQRMERMLGNLAASTAGMAGASPLLGGTGKDNVHLIVALTANRGLCGGFNGSIIRATRTLVRELEAQGKTVKLLCIGKKGRDGLKREFPKQI 137          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_PELUB (ATP synthase gamma chain OS=Pelagibacter ubique GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  277 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKNVE 711
            ++ R+ SVK+ QKITKAMKMVAA+KLR  Q  AE  R   +    ++ +               + T + K ++ + ++SD+GLCGG N+  +K +K+  +  S   K  K + +G K    L R  K  I   I+      ++Y     +   I++N E
Sbjct:    7 LKKRIASVKSTQKITKAMKMVAAAKLRRAQENAEKGRPYSEKMNNIILNLSSGISDKENAPKLLSGTGEDKVHLCIVLTSDRGLCGGFNTNIIKKAKTYFQKISDEGKTLKIITVGSKGYDQLKRVYKDAIVERISFKDSKTINYLDAEKVGKMIIENFE 166          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_NOVAD (ATP synthase gamma chain OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIEL-IITELQKNPLHYTQVSVLADDIL 699
            S + ++ R+ SVK+ QKITKA +MVAA+KLR  Q  AE +R        ++G                  T   +++++V +++DKGLCGG+NS  +K +K   +      K   + ++G+K +A + RD    I     T L + P  + + + +A ++L
Sbjct:    3 SLKELKGRINSVKSTQKITKAKQMVAAAKLRKAQAAAEAARPYASRLAEVMGSLAAKVAGQDNGPLLMRGTGSNQRHLLVVVNTDKGLCGGLNSNIIKEAKLQARALEAAGKTVTFYLVGKKGRAPIRRDYPNGIAAGYDTSLVRTP-GFDEAAAIAQELL 162          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_EHRCR (ATP synthase gamma chain OS=Ehrlichia chaffeensis (strain Arkansas) GN=atpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  286 RMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVD-------AKKN--VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKA 588
            R+KSVK+IQK TK M+M++A+KL  +Q K EN++      ++++   P+         AKK   ++V +SSD+GLCG  N+  VK +KS  +     +KE K +  G+KA
Sbjct:   10 RIKSVKSIQKTTKVMQMISAAKLHRVQQKLENAKKHLLELSSIVDYVPSDGVHNCASIAKKERVLLVVMSSDRGLCGNFNNLIVKFTKSYVEKLESSNKEVKLIFFGKKA 119          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_PHEZH (ATP synthase gamma chain OS=Phenylobacterium zucineum (strain HLK1) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 53/173 (30.64%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD--------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIIT-ELQKNP--LHYTQVSVLADDILKNVEIDALRII 732
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  A+N+R   Q   +++ +                T   +++++V  +SD+GL GG NS  V+ ++      S   K+ + + +G KA+  L R + +   L+ T E   NP      +VS    ++ +  E+D + ++
Sbjct:    3 SLKEMRNRIGSVKATQKITKAMQMVAAAKLRKAQDAAQNARPYAQRMASVIANLAAGVSGDGAPKLLAGTGSDRRHLVVVATSDRGLAGGFNSAIVRAARERINALSAEGKDVRVITIGRKARDQLRRLAGE--RLVATYEAGSNPSLAVAEEVSARIQEMFEAGEVDVVHLV 173          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKNVE 711
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +   ++L +               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P+ Y   + +ADDIL   E
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFE 166          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_AZOC5 (ATP synthase gamma chain OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  265 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTP-----TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEK 585
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q+ AE +R   +   ++LG          DTP     T   +K++++  +S++GLCG  N+  V+  +    L  G  K+ K+  +G K
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQMAAEAARPYAERMDSVLGNIASGVTLSADTPLLLSGTGKDEKHLLLVCTSERGLCGAFNTNIVRAVRERANLLIGQGKDVKFFCVGRK 124          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_JANSC (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  277 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTVDAKK---------------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILKNVEID 717
            ++NR+ SVK+ +KITKAM+MVAA+KLR  Q  AE +R   +   A++    +                    +++V +++++GLCGG NST V+ ++   +   G  K  K + +G+K +  L RD    +   +       L Y   + +A D+L   E D
Sbjct:    7 LKNRIASVKSTRKITKAMQMVAAAKLRRAQEAAEMARPYAEKMEAVMSGLASAVGNSEGAPRLLAGNGKDQVHLLVVMTAERGLCGGFNSTIVRKARVHAQKLLGEGKTIKILTVGKKGREQLRRDYADHLIGHVDLSDVKRLGYADAASIATDVLNRFEED 168          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_HALOH (ATP synthase gamma chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  277 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDT----------PTVDAKKN---VIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAK 591
            ++ R+ S+KN QKITKAMKMVAA+KL+  Q+KAEN+R  ++   ++L D           P +  K+N   + V I++D+GLCG  N+   ++   + KL    D+ N ++ +G K +
Sbjct:    7 IKRRINSIKNTQKITKAMKMVAAAKLKKAQLKAENARPFFEKTRSILIDVARRTRQKDIHPLLREKENNRSLFVMITADRGLCGAYNA---RVIDRVKKLTEKEDEVN-FLAVGRKGR 120          
BLAST of CF836073 vs. ExPASy Swiss-Prot
Match: ATPG_DROME (ATP synthase subunit gamma, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-gamma PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 47/149 (31.54%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  271 QIVRNRMKSVKNIQKITKAMKMVAASKLRAIQ--VKAENSRGLW-QPFTALLGDTPTVDAK-KNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKEN-KYVILGEKAKAILVRDSKKDIELIITELQKNPLHYTQVSVLADDILK 702
            +++  R+KSVKNIQKIT++MKMV+A+K    +  +KA    G+  Q F       P   A+ K +++ ++SD+GLCG +++   ++ +         D+ N K   +G+K++AIL R   K+I ++  E+ + P  +   S +A+++L+
Sbjct:   30 KMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRG----ELAQDEANTKVFCVGDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQ 174          
The following BLAST results are available for this feature:
BLAST of CF836073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ATPG_RHORT6.310e-1235.56ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_PELUB6.310e-1230.63ATP synthase gamma chain OS=Pelagibacter ubique GN... [more]
ATPG_NOVAD6.310e-1229.81ATP synthase gamma chain OS=Novosphingobium aromat... [more]
ATPG_EHRCR6.310e-1238.18ATP synthase gamma chain OS=Ehrlichia chaffeensis ... [more]
ATPG_PHEZH8.241e-1230.64ATP synthase gamma chain OS=Phenylobacterium zucin... [more]
ATPG_METPB1.076e-1130.49ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_AZOC51.076e-1136.89ATP synthase gamma chain OS=Azorhizobium caulinoda... [more]
ATPG_JANSC1.406e-1129.63ATP synthase gamma chain OS=Jannaschia sp. (strain... [more]
ATPG_HALOH1.406e-1136.44ATP synthase gamma chain OS=Halothermothrix orenii... [more]
ATPG_DROME1.406e-1131.54ATP synthase subunit gamma, mitochondrial OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836073 ID=CF836073; Name=CF836073; organism=Citrus sinensis; type=EST; length=734bp
CGGCAAAAGTGCAATTAGGTGAAATTTGTTCGACACCTGAGCTCGCACGA
CCCAAACAGAACATAAAGCTTTGGATCTGCAGCGTTCAAAATAAAATATT
TCTAGGGTTTCCTACGACGACGGTTCATCAGAAAAATGGCGATGGCTGCT
CTGAGGCGCGAAGGCCGGCGATTCGCCACCCCTCTCATCTCCCCACGTCC
AATCGCCGCAATCAGATCCCCTTTCCTTTCCGAGGAGGATGCCCCTCTGG
GAGTCCGGTCTATTTCAACTCAAATTGTTAGAAACCGGATGAAGAGTGTT
AAGAATATTCAGAAAATTACAAAGGCTATGAAGATGGTTGCAGCCTCAAA
GTTAAGAGCAATTCAAGTTAAAGCTGAAAATTCCCGTGGTCTGTGGCAGC
CATTCACTGCACTTCTTGGTGACACTCCCACTGTTGATGCTAAGAAGAAT
GTTATTGTGACCATCTCTTCTGACAAAGGTCTATGTGGTGGAATTAACTC
TACTGCAGTTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCG
ACAAAGAAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTA
GTACGTGACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAA
AAATCCTCTNCATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAA
AGAATGTAGAAATTGATGCTTTGAGGATTATCTA
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