CF836092

Overview
NameCF836092
Unique NameCF836092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1788 contig Csv1_Contig1788:26..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 6.958e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -3
Query:  113 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 334
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 6.958e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -3
Query:  113 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 334
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 6.958e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -3
Query:  113 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 334
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.024e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = -3
Query:  113 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 340
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLY
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLY 115          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.238e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = -3
Query:  125 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 346
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.512e-28
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = -3
Query:  113 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 340
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLY
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLY 104          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.095e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = -3
Query:  116 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 346
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_ENCCU (Histone H4 OS=Encephalitozoon cuniculi GN=HHF1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = -3
Query:  125 ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 322
            I+KPAIRR+ARR GV+R+ G  ++E     + ++ + +  A  Y  HA+RKT+T  D++++LKR G
Sbjct:   32 ISKPAIRRIARRAGVRRVGGGCFKEINNAAREYIRDTLSIACIYATHAKRKTITCSDILHSLKRMG 97          
The following BLAST results are available for this feature:
BLAST of CF836092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_TETTH6.958e-3086.49Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY6.958e-3086.49Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY6.958e-3086.49Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H4_ENTHI2.024e-2981.58Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H42_BLEJA2.238e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4_DICDI6.512e-2881.58Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN2.095e-2681.82Histone H4-like protein type G OS=Homo sapiens GN=... [more]
H4_ENCCU9.447e-1142.42Histone H4 OS=Encephalitozoon cuniculi GN=HHF1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836092 ID=CF836092; Name=CF836092; organism=Citrus sinensis; type=EST; length=459bp
CATAAAATTTCATTGATCCCATTAATATCAATACAAATTACAAAGTCATC
AGATACTCCCTTTCATTCCAAAACATAAAAATTAAGAAACCCTAAATTTA
ACCACCGAAACCGTAAAGGGTCCTGCCCTGCCTCTTCAAAGCATAAACAA
CATCCATGGCGGTGACAGTCTTACGACGAGCGTGCTCAGTGTAAGTCACA
GCATCACGAATCACGTTCTCCAAAAAGATCTTCAAAACCCCGCGAGTCTC
CTCGTAAATCAGACCGCTGATACGCTTGACTCCGCCACGCCTCGCCAGCC
GCCGGATAGCCGGCTTTGTGATCCCCTGAATGTTATCCCTCAGCACCTTG
CGGTGCCTCTTCGCTCCTCCCTTTCCCAATCCTTTGCCCCCCTTTCCTCT
TCCTGACATTTCTCTTCTGCTTTCCTTCTCTCTCTTTTCAGTTCTTTAAT
TTTATGCTT
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