CF836092

Overview
NameCF836092
Unique NameCF836092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DROOR (Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DROME (Histone H4 OS=Drosophila melanogaster GN=His4 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DROMA (Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DROHY (Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DROER (Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_CHITH (Histone H4 OS=Chironomus thummi thummi GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_CHICK (Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_CHAVR (Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_CAIMO (Histone H4 OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CF836092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_DROOR1.309e-3697.44Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3[more]
H4_DROME1.309e-3697.44Histone H4 OS=Drosophila melanogaster GN=His4 PE=1... [more]
H4_DROMA1.309e-3697.44Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 S... [more]
H4_DROHY1.309e-3697.44Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2[more]
H4_DROER1.309e-3697.44Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2[more]
H4_CHITH1.309e-3697.44Histone H4 OS=Chironomus thummi thummi GN=His4 PE=... [more]
H4_CHICK1.309e-3697.44Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2[more]
H4_CHAVR1.309e-3697.44Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3[more]
H4_CAIMO1.309e-3697.44Histone H4 OS=Cairina moschata PE=3 SV=2[more]
H4_BOVIN1.309e-3697.44Histone H4 OS=Bos taurus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836092 ID=CF836092; Name=CF836092; organism=Citrus sinensis; type=EST; length=459bp
CATAAAATTTCATTGATCCCATTAATATCAATACAAATTACAAAGTCATC
AGATACTCCCTTTCATTCCAAAACATAAAAATTAAGAAACCCTAAATTTA
ACCACCGAAACCGTAAAGGGTCCTGCCCTGCCTCTTCAAAGCATAAACAA
CATCCATGGCGGTGACAGTCTTACGACGAGCGTGCTCAGTGTAAGTCACA
GCATCACGAATCACGTTCTCCAAAAAGATCTTCAAAACCCCGCGAGTCTC
CTCGTAAATCAGACCGCTGATACGCTTGACTCCGCCACGCCTCGCCAGCC
GCCGGATAGCCGGCTTTGTGATCCCCTGAATGTTATCCCTCAGCACCTTG
CGGTGCCTCTTCGCTCCTCCCTTTCCCAATCCTTTGCCCCCCTTTCCTCT
TCCTGACATTTCTCTTCTGCTTTCCTTCTCTCTCTTTTCAGTTCTTTAAT
TTTATGCTT
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