CF836092

Overview
NameCF836092
Unique NameCF836092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1788 contig Csv1_Contig1788:26..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.447e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+F +NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_PHACH (Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.469e-35
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_AGABI (Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.469e-35
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_PHYPO (Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRIS  IYEETRGVLK FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISNTIYEETRGVLKTFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_CHLRE (Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_MORAP (Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_VOLCA (Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_EIMTE (Histone H4 OS=Eimeria tenella PE=3 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 71/78 (91.03%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEE RGVLK+FLEN+I+D+VTYTEHARRKTVTAMD+VY+LKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEEIRGVLKVFLENIIKDSVTYTEHARRKTVTAMDIVYSLKRQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_ASCSU (Histone H4 OS=Ascaris suum PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.225e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALK QGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKHQGRTLY 99
[Close]
BLAST of CF836092 vs. ExPASy Swiss-Prot
Match: H4_USTMA (Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 2.090e-34
Identity = 70/78 (89.74%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  113 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 346
            +LRDNIQGITKPAIRRLARRGGVKRISGLIY+ETRGVLK+FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYDETRGVLKLFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CF836092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_DIAPU1.447e-3594.87Histone H4 OS=Diadromus pulchellus PE=3 SV=3[more]
H4_PHACH2.469e-3593.59Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 ... [more]
H4_AGABI2.469e-3593.59Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2[more]
H4_PHYPO3.224e-3596.15Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV... [more]
H4_CHLRE3.224e-3596.15Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE... [more]
H4_MORAP4.211e-3592.31Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3[more]
H4_VOLCA5.500e-3596.15Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2[more]
H4_EIMTE5.500e-3591.03Histone H4 OS=Eimeria tenella PE=3 SV=3[more]
H4_ASCSU1.225e-3493.59Histone H4 OS=Ascaris suum PE=3 SV=2[more]
H4_USTMA2.090e-3489.74Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836092 ID=CF836092; Name=CF836092; organism=Citrus sinensis; type=EST; length=459bp
CATAAAATTTCATTGATCCCATTAATATCAATACAAATTACAAAGTCATC
AGATACTCCCTTTCATTCCAAAACATAAAAATTAAGAAACCCTAAATTTA
ACCACCGAAACCGTAAAGGGTCCTGCCCTGCCTCTTCAAAGCATAAACAA
CATCCATGGCGGTGACAGTCTTACGACGAGCGTGCTCAGTGTAAGTCACA
GCATCACGAATCACGTTCTCCAAAAAGATCTTCAAAACCCCGCGAGTCTC
CTCGTAAATCAGACCGCTGATACGCTTGACTCCGCCACGCCTCGCCAGCC
GCCGGATAGCCGGCTTTGTGATCCCCTGAATGTTATCCCTCAGCACCTTG
CGGTGCCTCTTCGCTCCTCCCTTTCCCAATCCTTTGCCCCCCTTTCCTCT
TCCTGACATTTCTCTTCTGCTTTCCTTCTCTCTCTTTTCAGTTCTTTAAT
TTTATGCTT
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