CF836103

Overview
NameCF836103
Unique NameCF836103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.215e-14
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836
            + HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  179 EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836
            + HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  180 EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  567 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 836
            + HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A+ L+++   GR +KV  KRTN PG+        +  G RG  P   G PF
Sbjct:  164 EAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISS-----TDRGGLRG-HPGSRGAPF 248          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836
            + +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A+ L+E+   GR +KV  KRTN PG+
Sbjct:  156 EAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = -2
Query:  594 QQHFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 836
            ++HF+ CG + R TI  DKF +  K FAY+EF +  +++NAL++N +    R + V+AKRTNIPGM    RG    TFG RGR
Sbjct:   78 EEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 159          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.755e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = -2
Query:  594 QQHFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 836
            ++HF+ CG + + TI  DKF +  K FAY+EF +  +++NAL++N +    R + V+AKRTNIPGM    RG    TFG RGR
Sbjct:   72 EEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 153          
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836
            + +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+E+   GR +KV  KRTN PG+
Sbjct:  160 EAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
The following BLAST results are available for this feature:
BLAST of CF836103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PAB2B_XENLA2.215e-1457.58Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR4.935e-1456.06Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
EPAB2_HUMAN2.708e-1246.15Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
EPAB2_RAT6.033e-1251.52Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
YQOC_CAEEL1.029e-1146.99Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL1.755e-1145.78Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
EPAB2_MOUSE5.107e-1150.00Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836103 ID=CF836103; Name=CF836103; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTTAAGAACAAAAACATTGATGTTGTAGGCTTTCTTTT
CCCATGATACATGACATGGCGTCTCAGAAAATTTTCACTCGCAACACTTT
TATCTGAATAAGATCCTTGCTAGGGTTAGAATCACCGTAACTAACCTTAA
AAATGTATTGAACTAGAAAAACATGAATTCCTTGGCAGGTAAACTCAACA
ACAGTATGAACCTTAAAATGCCCAATCTAAGATCAAGAGTTCACAAATAC
ATGAAAAACATTTTTGTTACTACAACATCTGCATTTCTGCCTTTCTTCTA
TCCCTTTCCAAAGCAAGCAAATGCAGGACTTCCAAGTAAAATTAAAATCC
ATAACTGCTGCAGGCAAAGCCCTCCAGGAAGGAGCCAGTTGGCTTCCACA
TGCCAATGATGATACAAATGCTTTTTTCTTCCCCAAATTACAGATATAAT
GACACGACTGTCTAAGAATGAATTTGGACCAAGACTAACATGAGATACCA
CCATTAGTATGGCCTGTACCTCATGGGTCGTCTGAACCTTGGAATCCTTC
CATACCCATATGGAACAAAAGGAACACCAGGAATGAATGGCCTTCGACCT
CGGAAACCAAACGTGTTGGGTCGCCTTCCTCGGAATTGTTTCATACCAGG
AATGTTGGTTCGCTTAGCAGAGACCTTCAATTGTCGACCATGGAGCTCTG
TTTCATTTAACAAAAGAGCATTCTGAACAGCATCAATTTCAACAAACTCA
ACATAAGCAAATCCTTTTGGTTGACCAAACTTGTCTGTCAAAATCGTCAC
TCTGTTAACCGTTCCACAAGATTGAAAATGCTGCTGC
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