CF836103
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.215e-14 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = -2 Query: 642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836 + HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ Sbjct: 179 EAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.935e-14 Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = -2 Query: 642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836 + HF CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ Sbjct: 180 EAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = -2 Query: 567 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 836 + HF CG V+RVTIL DKF G PKG+AY+EF +VQ A+ L+++ GR +KV KRTN PG+ + G RG P G PF Sbjct: 164 EAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISS-----TDRGGLRG-HPGSRGAPF 248
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12 Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = -2 Query: 642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836 + +F CG ++RVTIL DKF G PKG+AY+EF +VQ A+ L+E+ GR +KV KRTN PG+ Sbjct: 156 EAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11 Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = -2 Query: 594 QQHFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 836 ++HF+ CG + R TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTNIPGM RG TFG RGR Sbjct: 78 EEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 159
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.755e-11 Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = -2 Query: 594 QQHFQSCGTVNRVTILTDKFGQP-KGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 836 ++HF+ CG + + TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTNIPGM RG TFG RGR Sbjct: 72 EEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 153
BLAST of CF836103 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11 Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -2 Query: 642 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 836 + +F CG ++RVTIL DKF G PKG+AY+EF +V+ A+ L+E+ GR +KV KRTN PG+ Sbjct: 160 EAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225 The following BLAST results are available for this feature:
BLAST of CF836103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF836103 ID=CF836103; Name=CF836103; organism=Citrus sinensis; type=EST; length=837bpback to top |