CF836104

Overview
NameCF836104
Unique NameCF836104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1153 contig Csv1_Contig1153:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 2
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283
            EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  155 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283
            EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+E+   GRQ+KV  KRTN PG+
Sbjct:  156 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 59/120 (49.17%), Postives = 74/120 (61.67%), Query Frame = 2
Query:    2 SATHAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 358
            S T  EK E D RS+YVGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A+ L+++   GR +KV  KRTN PG+        +  G RG  P   G PF
Sbjct:  135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISS-----TDRGGLRG-HPGSRGAPF 248          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 51/110 (46.36%), Postives = 75/110 (68.18%), Query Frame = 2
Query:    8 THAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 331
            T  E++ +D++S+++GNVD+  T EEV++HF+ CG + R TI  DKF  + K FAY+EF +  +++NAL++N +    R + V+AKRTNIPGM    RG    TFG RGR
Sbjct:   51 TEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 159          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20
Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query:    8 THAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 331
            T  E++ +D++S+++GNVD+  T EE+++HF+ CG + + TI  DKF  + K FAY+EF +  +++NAL++N +    R + V+AKRTNIPGM    RG    TFG RGR
Sbjct:   45 TEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 153          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2
Query:   17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283
            E  E D RS+YVGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A+ L+E+   GR +KV  KRTN PG+
Sbjct:  132 ENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2
Query:    2 SATHAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283
            S T  E  E D RS++VGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+E+   GR +KV  KRTN PG+
Sbjct:  131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2
Query:   11 HAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ 289
            HA + E DSRSI+VGN+    TPE+++ HF+ CG + R+T+L D+  G PKG+ Y+EF      + AL LN  EL G+++ VS KRTNIPG  +
Sbjct:   55 HAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR 148          
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2
Query:   14 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 253
            +E    D RS++VGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   D+V  AL LN +EL GR+L+V
Sbjct:  279 SETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV 359          
The following BLAST results are available for this feature:
BLAST of CF836104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PAB2B_XENLA1.092e-2461.11Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR2.432e-2460.00Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
EPAB2_HUMAN3.883e-2249.17Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
YQOC_CAEEL2.783e-2046.36Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL6.199e-2044.55Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
EPAB2_RAT8.096e-2052.22Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE4.018e-1949.47Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST6.854e-1947.87RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
RBM34_HUMAN6.869e-1143.21RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836104 ID=CF836104; Name=CF836104; organism=Citrus sinensis; type=EST; length=727bp
TTCTGCAACTCACGCTGAAAAGGAGGAGGTGGACTCCCGATCAATCTATG
TTGGCAATGTAGACTATGCATGCACTCCTGAGGAAGTGCAGCAGCATTTT
CAATCTTGTGGAACGGTTAACAGAGTGACGATTTTGACAGACAAGTTTGG
TCAACCAAAAGGATTTGCTTATGTTGAGTTTGTTGAAATTGATGCTGTTC
AGAATGCTCTTTTGTTAAATGAAACAGAGCTCCATGGTCGACAATTGAAG
GTCTCTGCTAAGCGAACCAACATTCCTGGTATGAAACAATTCCGAGGAAG
GCGACCCAACACGTTTGGTTTCCGAGGTCGAAGGCCATTCATTCCTGGTG
TTCCTTTTGTTCCATATGGGTATGGAAGGATTCCAAGGTTCAGACGACCC
ATGAGGTACAGGCCATACTAATGGTGGTATCTCATGTTAGTCTTGGTCCA
AATTCATTCTTAGACAGTCGTGTCATTATATCTGTAATTTGGGGAAGAAA
AAAGCATTTGTATCATCATTGGCATGTGGAAGCCAACTGGCTCCTTCCTG
GAGGGCTTTGCCTGCAGCAGTTATGGATTTTAATTTTACTTGGAAGTCCT
GCATTTGCTTGCTTTGGAAAGGGATAGAAGAAAGGCAGAAATGCAGATGT
TGTAGTAACAAAAATGTTTTTCATGTATTTGTGAACTCTTGATCTTAGAT
TGGGCATTTTAAGGTTCATACTGTTGT
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