CF836104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24 Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283 EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ Sbjct: 155 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24 Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283 EK E D+RSIYVGNVDY T EE++ HF CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+E+ GRQ+KV KRTN PG+ Sbjct: 156 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22 Identity = 59/120 (49.17%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 2 SATHAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQFRGRRPNTFGFRGRRPFIPGVPF 358 S T EK E D RS+YVGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A+ L+++ GR +KV KRTN PG+ + G RG P G PF Sbjct: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISS-----TDRGGLRG-HPGSRGAPF 248
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20 Identity = 51/110 (46.36%), Postives = 75/110 (68.18%), Query Frame = 2 Query: 8 THAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 331 T E++ +D++S+++GNVD+ T EEV++HF+ CG + R TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTNIPGM RG TFG RGR Sbjct: 51 TEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 159
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20 Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 2 Query: 8 THAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ-FRGRRPNTFGFRGR 331 T E++ +D++S+++GNVD+ T EE+++HF+ CG + + TI DKF + K FAY+EF + +++NAL++N + R + V+AKRTNIPGM RG TFG RGR Sbjct: 45 TEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGMGHGVRGSSRGTFG-RGR 153
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20 Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2 Query: 17 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283 E E D RS+YVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +VQ A+ L+E+ GR +KV KRTN PG+ Sbjct: 132 ENVEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19 Identity = 47/95 (49.47%), Postives = 64/95 (67.37%), Query Frame = 2 Query: 2 SATHAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGM 283 S T E E D RS++VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +V+ A+ L+E+ GR +KV KRTN PG+ Sbjct: 131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19 Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2 Query: 11 HAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKVSAKRTNIPGMKQ 289 HA + E DSRSI+VGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF + AL LN EL G+++ VS KRTNIPG + Sbjct: 55 HAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR 148
BLAST of CF836104 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11 Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2 Query: 14 AEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEIDAVQNALLLNETELHGRQLKV 253 +E D RS++VGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V AL LN +EL GR+L+V Sbjct: 279 SETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRV 359 The following BLAST results are available for this feature:
BLAST of CF836104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836104 ID=CF836104; Name=CF836104; organism=Citrus sinensis; type=EST; length=727bpback to top |