CF836106

Overview
NameCF836106
Unique NameCF836106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836106_ssr102 microsatellite CF836106_ssr102:102..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1154 contig Csv1_Contig1154:1..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP12_ARATH (Serine carboxypeptidase-like 12 OS=Arabidopsis thaliana GN=SCPL12 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.201e-45
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S VKFLPGF+GPLPFELETGY+G+GE  D QLFYYF+KSE+NP+EDPLLLWL+GGPGCS+ +GL +E GP+      YNGS+P+L    YSWTK A+I+F+D P+G G+SY++ PL     D  +V+ + +F  K
Sbjct:   21 SGSIVKFLPGFEGPLPFELETGYIGIGEEEDVQLFYYFIKSERNPKEDPLLLWLSGGPGCSSITGLLFENGPLALKSKVYNGSVPSLVSTTYSWTKTANIIFLDQPIGAGFSYSRIPLIDTPSDTGEVKNIHEFLQK 157          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP11_ARATH (Serine carboxypeptidase-like 11 OS=Arabidopsis thaliana GN=SCPL11 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.960e-45
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S VKFLPGF+GPLPFELETGY+G+GE  + QLFYYF+KSE+NP+EDPLLLWL+GGPGCS+ +GL ++ GP+      YNGS+P+L    YSWTK A+I+F+D PVG G+SY++ PL     D  +V+++ +F  K
Sbjct:   21 SGSIVKFLPGFEGPLPFELETGYIGIGEEEEVQLFYYFIKSERNPKEDPLLLWLSGGPGCSSITGLLFQNGPLALKSEVYNGSVPSLVSTTYSWTKTANIIFLDQPVGAGFSYSRAPLIDTPTDTGEVKRIHEFLQK 157          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP18_ARATH (Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 7.784e-45
Identity = 81/137 (59.12%), Postives = 100/137 (72.99%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S + +LPGF+G LPF LETGY+GVGE    QLFYYF+KSE NP EDPL++WLTGGP C+A S LA+EIGP+ F    YNG LP+L    YSWTK ASI+F+D PVGTGYSY+ TPL+ +  D  + +Q  +F  K
Sbjct:   25 SASVISYLPGFEGLLPFHLETGYIGVGEGEKVQLFYYFIKSENNPEEDPLIIWLTGGPACTALSALAFEIGPLTFKTEGYNGGLPSLVSTSYSWTKVASIIFLDQPVGTGYSYSTTPLSYKPSDTGEAKQTYEFLQK 161          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP8_ARATH (Serine carboxypeptidase-like 8 OS=Arabidopsis thaliana GN=SCPL8 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.328e-44
Identity = 78/137 (56.93%), Postives = 102/137 (74.45%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S VKFLPGF+GPLPFELETGY+G+GE  + Q FYYF+KSE NP+EDPLL+WL GGPGCS   G+ +E GP+      +NGS P+L    YSWTK A+I+F+D PVG+G+SY+KTP+  + GD  +V++  +F  K
Sbjct:   19 SASIVKFLPGFEGPLPFELETGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPI-DKTGDISEVKRTHEFLQK 154          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP1_ARATH (Serine carboxypeptidase-like 1 OS=Arabidopsis thaliana GN=SCPL1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.328e-44
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S VK LPGF+G LPFELETGY+GVGE  + QLFYYF+KSE+NP+EDPL+LWLTGGPGCSA SGL +E GP+   +  YNG+LP+L    YSWTK +SI+F+D PVGTG+SY++T   ++  D  + +++ +F  K
Sbjct:   29 SASIVKSLPGFEGQLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLILWLTGGPGCSAISGLLFENGPLTMKLDVYNGTLPSLVSTTYSWTKTSSIIFLDQPVGTGFSYSRTQQFNKPSDSGEAKRIHEFLQK 165          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP9_ARATH (Serine carboxypeptidase-like 9 OS=Arabidopsis thaliana GN=SCPL9 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.958e-44
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S VKFLPGF+GPLPFELETGY+G+GE  + Q FYYF+KS+KNP+EDPL++WL GGPGCS  SGL +E GP+      YNGS+P+L    YSWTK A+I+F+D PVG+G+SY+KTP+  +  D  +V+++ +F  K
Sbjct:   21 SGSIVKFLPGFKGPLPFELETGYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPI-ERTSDTSEVKKIHEFLQK 156          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP3_ARATH (Serine carboxypeptidase-like 3 OS=Arabidopsis thaliana GN=SCPL3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.958e-44
Identity = 77/138 (55.80%), Postives = 107/138 (77.54%), Query Frame = 1
Query:  148 ASYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            +S + +K LPGF+GPLPFELETGY+GVGE  + QLFYYF+KSE+NP+EDPLLLWL+GGPGCS+ SGL +E GP+   +  YNG+LP+L    YSWTK +S++F+D PVG G+SY++T L ++  D  + +++ +F  K
Sbjct:   28 SSATIIKSLPGFEGPLPFELETGYIGVGEEEEVQLFYYFIKSERNPKEDPLLLWLSGGPGCSSISGLLFENGPLAMKLDVYNGTLPSLVSTTYSWTKASSMIFLDQPVGAGFSYSRTQLLNKPSDSGEAKRIHEFLQK 165          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP5_ARATH (Serine carboxypeptidase-like 5 OS=Arabidopsis thaliana GN=SCPL5 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 3.863e-44
Identity = 78/137 (56.93%), Postives = 106/137 (77.37%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S S VKFLPGF+G LPFELETGY+G+GE  + QLFYYF+KSE+NP+EDPLLLWL+GGPGCS+ SGL +E GP+   +  YNG+LP+L    YSWTK +S++F+D PVGTG+SY++T   ++  D  + +++ +F  K
Sbjct:   28 SASIVKFLPGFEGSLPFELETGYIGIGEEEEVQLFYYFIKSERNPKEDPLLLWLSGGPGCSSISGLLFENGPLAMKLDVYNGTLPSLVPTTYSWTKTSSMIFLDQPVGTGFSYSRTQQYNKPSDSGEAKRIHEFLQK 164          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP10_ARATH (Serine carboxypeptidase-like 10 OS=Arabidopsis thaliana GN=SCPL10 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.168e-42
Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 1
Query:  151 SYSTVKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFKQVQQVDQFSSK 561
            S + VK LPG +G LPFELETGY+G+GE  D QLFYYF+KSE NP+EDPLLLWL GGPGCS+  GL +E GP+      YNGS P+L    YSWTK A+I+++D PVG+G+SY++TP+  ++ D  +V+++ +F  K
Sbjct:   21 SAAIVKSLPGLEGRLPFELETGYIGIGEEEDIQLFYYFIKSENNPKEDPLLLWLDGGPGCSSLGGLLFENGPVALKSAVYNGSNPSLFSTTYSWTKMANIIYLDQPVGSGFSYSRTPI-GKSSDTSEVKRIHEFLQK 156          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP20_ARATH (Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.068e-33
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  172 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGDFK 528
            LPGF+G  P +  +GYV + +     L+YYF++SEKNP +DP++LWL GGPGCS+  G  YE GP NF + + N SLP LHLNPYSW+K ++I+++DSPVG G+SY+        GD K
Sbjct:   38 LPGFEGTFPSKHYSGYVTIDKEHGKNLWYYFIESEKNPSKDPVVLWLNGGPGCSSMDGFVYEHGPFNFELPKKNNSLPLLHLNPYSWSKVSNIIYLDSPVGVGFSYSNNKSDYITGDIK 156          
The following BLAST results are available for this feature:
BLAST of CF836106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
SCP12_ARATH1.201e-4558.39Serine carboxypeptidase-like 12 OS=Arabidopsis tha... [more]
SCP11_ARATH5.960e-4557.66Serine carboxypeptidase-like 11 OS=Arabidopsis tha... [more]
SCP18_ARATH7.784e-4559.12Serine carboxypeptidase-like 18 OS=Arabidopsis tha... [more]
SCP8_ARATH1.328e-4456.93Serine carboxypeptidase-like 8 OS=Arabidopsis thal... [more]
SCP1_ARATH1.328e-4458.39Serine carboxypeptidase-like 1 OS=Arabidopsis thal... [more]
SCP9_ARATH2.958e-4457.66Serine carboxypeptidase-like 9 OS=Arabidopsis thal... [more]
SCP3_ARATH2.958e-4455.80Serine carboxypeptidase-like 3 OS=Arabidopsis thal... [more]
SCP5_ARATH3.863e-4456.93Serine carboxypeptidase-like 5 OS=Arabidopsis thal... [more]
SCP10_ARATH6.168e-4255.47Serine carboxypeptidase-like 10 OS=Arabidopsis tha... [more]
SCP20_ARATH3.068e-3351.26Serine carboxypeptidase-like 20 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02G20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836106 ID=CF836106; Name=CF836106; organism=Citrus sinensis; type=EST; length=569bp
TGAAGATTGTTCCCTAGTTGTTTCTCAAAGAAACTGGTTGGTTAAGACTT
AACATGCTGGAAAAGCCGAAAACAAACGCCAATGGACAAGCTTTGTTTTC
CTCTTCTTCTTCTTCTTCTTCTTGTACAGCTTTGCATGCAGCTTGCAGCT
TCTTACTCAACTGTTAAATTTCTTCCGGGATTCCAGGGCCCCCTCCCCTT
TGAACTTGAAACTGGGTATGTAGGAGTAGGTGAGTCGGGGGACGCACAGC
TCTTCTATTACTTTGTGAAGTCGGAGAAAAATCCAAGAGAGGACCCTCTC
TTGCTTTGGCTTACTGGTGGCCCTGGCTGCTCTGCCTTCTCAGGTCTTGC
TTATGAAATTGGTCCAATAAATTTCAACGTAGTGGAGTACAACGGGAGCT
TGCCTACTTTGCACTTGAATCCCTACTCATGGACAAAGGAAGCCAGCATA
TTATTTGTGGATTCGCCTGTTGGCACTGGATATTCCTACGCAAAAACCCC
ACTTGCCTCTCAAGCCGGTGACTTCAAACAAGTTCAGCAGGTTGACCAAT
TTTCTTCGAAAGTGGCTAT
back to top