CF836106

Overview
NameCF836106
Unique NameCF836106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836106_ssr102 microsatellite CF836106_ssr102:102..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1154 contig Csv1_Contig1154:1..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP53_ARATH (Putative serine carboxypeptidase-like 53 OS=Arabidopsis thaliana GN=SCPL53 PE=5 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.024e-20
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQAGDFK 528
            ++ LPG Q  + F+   GYV V ES    L+YYFV++       PL+LWL GGPGCS+  G   E+GP  F V   N    TL+ NPYSW   A++LF++SP GTG+SY  T       GD K
Sbjct:   80 IENLPG-QPSVNFKQYGGYVTVNESAGRSLYYYFVEATNTKNSSPLVLWLNGGPGCSSLYGAFQELGP--FRVHSDN---KTLYTNPYSWNNVANMLFLESPAGTGFSYTNTTTDMENPGDMK 196          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP44_ARATH (Serine carboxypeptidase-like 44 OS=Arabidopsis thaliana GN=SCPL44 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.081e-20
Identity = 53/118 (44.92%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  172 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAY-EIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPLASQAGD 522
            LPG Q  + F    GYV +       LFYYFV++EK P   PL LWL GGPGCS+  G A+ E+GP         G    L  NP SW K +++LFVDSP G G+SY+ T      GD
Sbjct:   41 LPG-QPEVAFRQFAGYVDIDVKAGRSLFYYFVEAEKQPHSKPLTLWLNGGPGCSSIGGGAFTELGPF-----YPTGDARGLRRNPKSWNKASNLLFVDSPAGVGWSYSNTTSDYTTGD 152          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP26_ARATH (Serine carboxypeptidase-like 26 OS=Arabidopsis thaliana GN=SCPL26 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.636e-20
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  172 LPGFQGPLPFELETGYVGVGESGDAQLFYYFVKS--EKNPREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKT 498
            LPG    + F   +GY+ V ES    LFY+  +S   +NP   PL+LWL GGPGCS+ + G A EIGP   N    +G   TL+ NPYSW K A++LF++SP G G+SY+ T
Sbjct:   33 LPGEPNDVSFSHFSGYITVNESAGRALFYWLTESPPSENPESKPLVLWLNGGPGCSSVAYGAAEEIGPFRINP---DGK--TLYHNPYSWNKLANLLFLESPAGVGFSYSNT 139          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP40_ARATH (Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.132e-19
Identity = 51/113 (45.13%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKT 498
            ++ LPG Q P+ F+   GYV V ES     FYYFV++ K+    PLLLWL GGPGCS+ + G   E+GP     V  +G   TL  N Y+W   A++LF++SP G G+SY  T
Sbjct:   82 IRRLPG-QPPVSFDQYGGYVTVNESAGRSFFYYFVEASKSKDSSPLLLWLNGGPGCSSLAYGALQELGPFR---VHSDGK--TLFRNRYAWNNAANVLFLESPAGVGFSYTNT 188          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: PPGB_BOVIN (Lysosomal protective protein OS=Bos taurus GN=CTSA PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.132e-19
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYA 492
            ++FLPG      F   +GY+    SG  +L Y+FV+S+K+P+  P++LWL GGPGCS+  GL  E GP    +++ +G   TL  NPYSW   A++L+++SP G G+SY+
Sbjct:   34 IRFLPGLAKQPSFRQYSGYLK--GSGSKRLHYWFVESQKDPKSSPVVLWLNGGPGCSSLDGLLTEHGPF---LIQPDG--VTLEYNPYSWNLIANVLYLESPAGVGFSYS 136          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP24_ARATH (Serine carboxypeptidase 24 OS=Arabidopsis thaliana GN=SCPL24 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEK-NPREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKT 498
            +K LPG Q  + F   +GYV V +S    LFY+  +S   +P   PLLLWL GGPGCS+ + G + EIGP   N    N     L+LN ++W K+A++LF++SP G GYSY  T
Sbjct:   33 IKALPG-QPKVAFSQYSGYVNVNQSHGRALFYWLTESSSPSPHTKPLLLWLNGGPGCSSIAYGASEEIGPFRINKTGSN-----LYLNKFAWNKDANLLFLESPAGVGYSYTNT 140          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP23_ARATH (Putative serine carboxypeptidase-like 23 OS=Arabidopsis thaliana GN=SCPL23 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.931e-19
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQAGDFKQVQQ 540
            +K LPG Q  + F   +GYV V ES    LFY+  +S  +    PLLLWL GGPGCS+   G + EIGP   N    N     L+LN ++W  EA+ILF++SP G G+SY  T      +GD +  Q+
Sbjct:   31 IKALPG-QPQVGFSQFSGYVTVNESHGRSLFYWLTESPSSSHTKPLLLWLNGGPGCSSIGYGASEEIGPFRINKTGSN-----LYLNKFTWNTEANILFLESPAGVGFSYTNTSSDLKDSGDERTAQE 152          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP22_ARATH (Serine carboxypeptidase-like 22 OS=Arabidopsis thaliana GN=SCPL22 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.293e-19
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKN-PREDPLLLWLTGGPGCSAFS-GLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL-ASQAGDFKQVQQ 540
            +K LPG Q  + F   +GYV V ES    LFY+  +S  + P   PLLLWL GGPGCS+ + G + EIGP   +    N     L+LN +SW  EA++LF++SPVG G+SY  T     ++GD +  Q+
Sbjct:   31 IKALPG-QPKVGFSQFSGYVTVNESHGRSLFYWLTESSSHSPHTKPLLLWLNGGPGCSSIAYGASEEIGPFRISKTGCN-----LYLNNFSWNTEANLLFLESPVGVGFSYTNTSSDFEESGDERTAQE 153          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCP37_ARATH (Serine carboxypeptidase-like 37 OS=Arabidopsis thaliana GN=SCPL37 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 48/114 (42.11%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  163 VKFLPGFQGPLPFELETGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGPINFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSYAKTPL 504
            +K LPG    + F    GYV V E     L+YYFV++ K     PL++W  GGP CS+  G   E+GP     V   G    L  NPYSW  EA++LF++SPV TG+SY+  P+
Sbjct:   65 IKKLPGQPSGVSFRQYGGYVPVNEPSSRFLYYYFVEAIKPNTSTPLVIWFNGGPACSSLGGAFLELGPFR---VHSGGR--KLFRNPYSWNNEANVLFLESPVTTGFSYSSNPI 173          
BLAST of CF836106 vs. ExPASy Swiss-Prot
Match: SCPL1_DICDI (Serine carboxypeptidase S10 family member 1 OS=Dictyostelium discoideum GN=DDB_G0291912 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.617e-19
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  211 TGYVGVGESGDAQLFYYFVKSEKNPREDPLLLWLTGGPGCSAFSGLAYEIGP--INFNVVEYNGSLPTLHLNPYSWTKEASILFVDSPVGTGYSY 489
            +GY  V E+ +A LFY F +S+ +P  DPL+LWLTGGPGCS+     YE GP  +N N+        TL  NP SW   A++L+VDSP+G G+SY
Sbjct:   27 SGYFNVNETTNANLFYLFYESQNSPSTDPLILWLTGGPGCSSLMAAFYENGPYFVNDNL--------TLSENPNSWNMVANVLYVDSPLGAGFSY 113          
The following BLAST results are available for this feature:
BLAST of CF836106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
SCP53_ARATH1.024e-2044.72Putative serine carboxypeptidase-like 53 OS=Arabid... [more]
SCP44_ARATH5.081e-2044.92Serine carboxypeptidase-like 44 OS=Arabidopsis tha... [more]
SCP26_ARATH6.636e-2046.43Serine carboxypeptidase-like 26 OS=Arabidopsis tha... [more]
SCP40_ARATH1.132e-1945.13Serine carboxypeptidase-like 40 OS=Arabidopsis tha... [more]
PPGB_BOVIN1.132e-1942.73Lysosomal protective protein OS=Bos taurus GN=CTSA... [more]
SCP24_ARATH1.478e-1944.74Serine carboxypeptidase 24 OS=Arabidopsis thaliana... [more]
SCP23_ARATH1.931e-1942.19Putative serine carboxypeptidase-like 23 OS=Arabid... [more]
SCP22_ARATH3.293e-1942.64Serine carboxypeptidase-like 22 OS=Arabidopsis tha... [more]
SCP37_ARATH4.301e-1942.11Serine carboxypeptidase-like 37 OS=Arabidopsis tha... [more]
SCPL1_DICDI5.617e-1948.42Serine carboxypeptidase S10 family member 1 OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836106 ID=CF836106; Name=CF836106; organism=Citrus sinensis; type=EST; length=569bp
TGAAGATTGTTCCCTAGTTGTTTCTCAAAGAAACTGGTTGGTTAAGACTT
AACATGCTGGAAAAGCCGAAAACAAACGCCAATGGACAAGCTTTGTTTTC
CTCTTCTTCTTCTTCTTCTTCTTGTACAGCTTTGCATGCAGCTTGCAGCT
TCTTACTCAACTGTTAAATTTCTTCCGGGATTCCAGGGCCCCCTCCCCTT
TGAACTTGAAACTGGGTATGTAGGAGTAGGTGAGTCGGGGGACGCACAGC
TCTTCTATTACTTTGTGAAGTCGGAGAAAAATCCAAGAGAGGACCCTCTC
TTGCTTTGGCTTACTGGTGGCCCTGGCTGCTCTGCCTTCTCAGGTCTTGC
TTATGAAATTGGTCCAATAAATTTCAACGTAGTGGAGTACAACGGGAGCT
TGCCTACTTTGCACTTGAATCCCTACTCATGGACAAAGGAAGCCAGCATA
TTATTTGTGGATTCGCCTGTTGGCACTGGATATTCCTACGCAAAAACCCC
ACTTGCCTCTCAAGCCGGTGACTTCAAACAAGTTCAGCAGGTTGACCAAT
TTTCTTCGAAAGTGGCTAT
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