CF836107

Overview
NameCF836107
Unique NameCF836107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.572e-41
Identity = 80/99 (80.81%), Postives = 86/99 (86.87%), Query Frame = -2
Query:  267 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 563
            +EVLLG  DG LAFVP+SF VS+G+ IVFKNNAGFPHNVVFDEDEIPSGVD +KISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 99          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.359e-41
Identity = 87/154 (56.49%), Postives = 104/154 (67.53%), Query Frame = -2
Query:  267 GLKAGATPARVVGSTMKASASAVPKLSIKATLKD-VGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKAG  P     S    +  +    S+KA+ K+ +G                 A+EVLLGG DGSLAFVPS+  V++GE +VFKNNAGFPHNV+FDEDE+P GVD   ISM  EDLLN PGET++VTL EKGTYS YCSPHQGAGM G++TVN
Sbjct:   16 GLKAGRAPTTPSTSIKPPTPMS---FSVKASFKEAIGTALVATAAGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFPHNVLFDEDEVPKGVDAGAISMKEEDLLNAPGETFSVTLKEKGTYSIYCSPHQGAGMAGKITVN 166          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.907e-36
Identity = 69/99 (69.70%), Postives = 82/99 (82.83%), Query Frame = -2
Query:  267 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 563
            +EVL+GG  G LAF+P+   V++GE+IVFKNNAGFPHNV+FDED +P+GVDVS ISMS EDLLN PGETY V L +KGTY F+C+PHQG GM G VTVN
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIFDEDAVPAGVDVSSISMSEEDLLNAPGETYVVKLDKKGTYRFFCAPHQGIGMSGIVTVN 99          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.698e-35
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = -2
Query:  267 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 560
            EV LG DDG L F PSSF+V++GEKI FKNNAGFPHN+VFDEDE+P+GV+  KIS    + LNG GETY VTLTEKGTY FYC PH GAGM G+VTVN
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAGVNAEKISQ--PEYLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.136e-35
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = -2
Query:  270 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 560
            EV LG DDG+L F PSSFSV+ GE I FKNNAGFPHN+VFDEDE+P+GVDVSKIS   ED L+G GE++ VTLTEKGTY FYC PH GAGM G+VTV
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVFDEDEVPAGVDVSKISQ--EDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVTV 96          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.784e-34
Identity = 70/98 (71.43%), Postives = 78/98 (79.59%), Query Frame = -2
Query:  267 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 560
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.784e-34
Identity = 70/98 (71.43%), Postives = 78/98 (79.59%), Query Frame = -2
Query:  267 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 560
            EVLLG + G L F P+ F+V SGE I FKNNAGFPHNVVFDED +PSGVDVSKIS   E+ LN PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSGVDVSKISQ--EEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.671e-32
Identity = 67/98 (68.37%), Postives = 77/98 (78.57%), Query Frame = -2
Query:  267 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 560
            +VLLG + G L F P+ FSV +GE I FKNNAG+PHNVVFDED +PSGVDVSKIS   E+ L  PGET++VTLT  GTY FYC PH GAGMVG+VTVN
Sbjct:   60 DVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSGVDVSKISQ--EEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 155          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.324e-29
Identity = 71/155 (45.81%), Postives = 89/155 (57.42%), Query Frame = -2
Query:  267 GLKAG--ATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 725
            GLKA   A PAR+  +++   A  V   +    LK VG                 A  V +GGDDG+L F P   SV++GE + F NN GFPHNVVFDED +P+GV    I  + ED LNGP E++++T    GTY FYC PHQGAGM G VTV+
Sbjct:   16 GLKAETKAAPARLSSTSVVRMAPVVRASASSDALKTVGKALLAASSSLLLVASANAATVKMGGDDGALGFYPKDISVAAGESVTFVNNKGFPHNVVFDEDAVPAGVKTEDI--NHEDYLNGPNESFSITFKTPGTYEFYCEPHQGAGMKGVVTVS 168          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.563e-28
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 557
            V LG D G+L FVP + ++ SGE + F NNAGFPHN+VFDED IPSGV+   I  S +D LN PGETY+V LT  G Y +YC PHQGAGMVG++ V
Sbjct:   51 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAI--SRDDYLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 144          
The following BLAST results are available for this feature:
BLAST of CF836107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_VICFA2.572e-4180.81Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_FRIAG3.359e-4156.49Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_GINBI1.907e-3669.70Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_PETCR4.698e-3571.43Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_DAUCA6.136e-3573.20Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_ORYSJ6.784e-3471.43Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI6.784e-3471.43Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_HORVU1.671e-3268.37Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_PHYPA1.324e-2945.81Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]
PLAS_CHLRE5.563e-2860.42Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836107 ID=CF836107; Name=CF836107; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTGAGTGGGTATAGAGTAACTATTCTCATTACTCAA
TGAAAGTCTAATGGGGCACCGATGTCTAAATTAGTTACATCACAAATCTG
CATTTGAAATAAATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGT
CTCACCACATAACATTCTCTCTCACCAAATGAAAATATGTATGATACTCA
TAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAG
TCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCT
TGGTGAGGGGAACAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAAC
AGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGA
TTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAAAACAACG
TTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCT
GACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAA
GCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAGCT
GTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGATGCTGAG
CTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACAACTCTGG
CTGGTGTTGCACCGGCTTTAAGGCCGGTGAAAGTTGGGACGGTGACAGCT
GCAGAGGTGACAGTAGCCATTGTAACTGTAAATGGGGTTCTGCTGTTTTT
T
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