CF836107

Overview
NameCF836107
Unique NameCF836107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ENTPR (Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.052e-26
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 557
            V LGGDDGSLAFVP++ +V +GE I F NNAGFPHN+VFDED +P+GVD   I  S ED LN  G+T    LT  GTY  YC PH GAGM   +TV
Sbjct:    4 VKLGGDDGSLAFVPNNITVGAGESIEFINNAGFPHNIVFDEDAVPAGVDADAI--SAEDYLNSKGQTVVRKLTTPGTYGVYCDPHSGAGMKMTITV 97          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_CHLFU (Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.206e-26
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = -2
Query:  270 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 563
            + V LG D G+L F PSS ++ +GE + + NNAGFPHN+VFDEDE+PSG +    ++S ED LN PGE+Y+      GTY ++C PHQGAGM G +TV
Sbjct:    2 VTVKLGADSGALVFEPSSVTIKAGETVTWVNNAGFPHNIVFDEDEVPSGANAE--ALSHEDYLNAPGESYSAKFDTAGTYGYFCEPHQGAGMKGTITV 97          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ULVPE (Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.160e-25
Identity = 58/96 (60.42%), Postives = 66/96 (68.75%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 557
            V LGGDDGSLAFVPS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:    4 VKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ULVAR (Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.584e-25
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 557
            V LGGDDG+LAFVPS  SV++GE I F NNAGFPHN+VFDED +P+GVD   IS   +D LN  GET    L+  G Y  YC PH GAGM   +TV
Sbjct:    4 VKLGGDDGALAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISY--DDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITV 97          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SCEOB (Plastocyanin, chloroplastic OS=Scenedesmus obliquus GN=PETE PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.584e-25
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = -2
Query:  270 KAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXAIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 719
            KA   PA+   +T+KASAS          L+ V                  A  V LG D G+L F P++ ++ +G+ + + NNAGFPHN+VFDED +P+GV+    ++S +D LN PGE+Y       G Y ++C PHQGAGMVG+V V
Sbjct:    7 KAAVAPAKATRTTVKASAS----------LQRVAQAAGVAVAGFSLALSANAANVKLGADSGALVFEPATVTIKAGDSVTWTNNAGFPHNIVFDEDAVPAGVNAD--ALSHDDYLNAPGESYTAKFDTAGEYGYFCEPHQGAGMVGKVIV 144          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_CYAP7 (Plastocyanin OS=Cyanothece sp. (strain PCC 7424) GN=petE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 557
            V +G D G L F P   ++ +G+ + + NN   PHN VFD  ++P  V  +KIS     L+  PGE++  T  E GTY++YC PH+GAGMVG +TV
Sbjct:   33 VKMGSDQGLLKFDPPQLTIKAGDTVKWVNNKLAPHNAVFDNSKVPDSVSATKISHKA--LVFSPGESFTTTFDEPGTYTYYCEPHRGAGMVGTITV 126          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SYNY3 (Plastocyanin OS=Synechocystis sp. (strain PCC 6803) GN=petE PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.679e-16
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKIS-MSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 557
            V +G D G+L F PS+ ++ +GE++ + NN   PHN+VF  D    GVD    + +S + L    GE++  T TE GTY++YC PH+GAGMVG+V V
Sbjct:   33 VKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAAD----GVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVV 125          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_PHOLA (Plastocyanin OS=Phormidium laminosum GN=petE PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTE---KGTYSFYCSPHQGAGMVGQVTV 557
            V +G D G L F P++ +V  G+ + + NN   PHN++FD+ ++P         +S   L+  PGE+Y +T +     GTY++YC+PH+GAGMVG++TV
Sbjct:   39 VKMGADSGLLQFEPANVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCAPHRGAGMVGKITV 137          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SYNP6 (Plastocyanin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  270 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 563
            + + +G D+G LAF PS+  + +G+ + + NN   PHNVV +           +  +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   37 VAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVE----------GQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SYNE7 (Plastocyanin OS=Synechococcus elongatus (strain PCC 7942) GN=petE PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.884e-16
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  270 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 563
            + + +G D+G LAF PS+  + +G+ + + NN   PHNVV +           +  +S +DL   PGET+  T +E GTY++YC PH+GAGMVG++ V
Sbjct:   37 VAIKMGADNGMLAFEPSTIEIQAGDTVQWVNNKLAPHNVVVE----------GQPELSHKDLAFSPGETFEATFSEPGTYTYYCEPHRGAGMVGKIVV 124          
The following BLAST results are available for this feature:
BLAST of CF836107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_ENTPR3.052e-2660.42Plastocyanin OS=Enteromorpha prolifera GN=PETE PE=... [more]
PLAS_CHLFU5.206e-2653.06Plastocyanin OS=Chlorella fusca GN=petE PE=1 SV=1[more]
PLAS_ULVPE1.160e-2560.42Plastocyanin OS=Ulva pertusa GN=PETE PE=1 SV=1[more]
PLAS_ULVAR2.584e-2559.38Plastocyanin OS=Ulva arasakii GN=PETE PE=1 SV=1[more]
PLAS_SCEOB2.584e-2540.00Plastocyanin, chloroplastic OS=Scenedesmus obliquu... [more]
PLAS_CYAP73.059e-1843.75Plastocyanin OS=Cyanothece sp. (strain PCC 7424) G... [more]
PLAS_SYNY31.679e-1644.33Plastocyanin OS=Synechocystis sp. (strain PCC 6803... [more]
PLAS_PHOLA2.193e-1639.39Plastocyanin OS=Phormidium laminosum GN=petE PE=1 ... [more]
PLAS_SYNP64.884e-1639.80Plastocyanin OS=Synechococcus sp. (strain ATCC 271... [more]
PLAS_SYNE74.884e-1639.80Plastocyanin OS=Synechococcus elongatus (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836107 ID=CF836107; Name=CF836107; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTGAGTGGGTATAGAGTAACTATTCTCATTACTCAA
TGAAAGTCTAATGGGGCACCGATGTCTAAATTAGTTACATCACAAATCTG
CATTTGAAATAAATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGT
CTCACCACATAACATTCTCTCTCACCAAATGAAAATATGTATGATACTCA
TAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAG
TCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCT
TGGTGAGGGGAACAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAAC
AGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGA
TTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAAAACAACG
TTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCT
GACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAA
GCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAGCT
GTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGATGCTGAG
CTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACAACTCTGG
CTGGTGTTGCACCGGCTTTAAGGCCGGTGAAAGTTGGGACGGTGACAGCT
GCAGAGGTGACAGTAGCCATTGTAACTGTAAATGGGGTTCTGCTGTTTTT
T
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