CF836107

Overview
NameCF836107
Unique NameCF836107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_PROHO (Plastocyanin OS=Prochlorothrix hollandica GN=petE PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.332e-16
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  270 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 563
            +++ +G D  +  + P + S+S+G+ + F  N   PHNV+FD+  +P+G   S  ++S   L   PG  Y+VTL   GTYSFYC+PH+GAGMVG +TV
Sbjct:   37 VQIKMGTDKYAPLYEPKALSISAGDTVEFVMNKVGPHNVIFDK--VPAGE--SAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCTPHRGAGMVGTITV 130          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ANAVT (Plastocyanin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petE PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.424e-15
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 557
            V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G YSFYC PH+GAGMVG++TV
Sbjct:   39 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDATLNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGDYSFYCEPHRGAGMVGKITV 137          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ANAVA (Plastocyanin OS=Anabaena variabilis GN=petE PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 557
            V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G Y+FYC PH+GAGMVG++TV
Sbjct:    5 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 103          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ANASP (Plastocyanin OS=Anabaena sp. (strain PCC 7120) GN=petE PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 557
            V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G Y+FYC PH+GAGMVG++TV
Sbjct:   39 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 137          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_ANASO (Plastocyanin OS=Anabaena sp. (strain PCC 7119) GN=petE PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.053e-15
Identity = 44/100 (44.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  270 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 557
            V LG D G L F P+  ++  G+ + F NN   PHNVVFD    P+   D++K S+S + LL  PG++ + T       G Y+FYC PH+GAGMVG++TV
Sbjct:   39 VKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAK-SLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCEPHRGAGMVGKITV 137          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_NOSP7 (Plastocyanin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.971e-14
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = -2
Query:  270 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPS-GVDVSKISMSTEDLLNGPGETYAVTL---TEKGTYSFYCSPHQGAGMVGQVTV 560
            +V LG D G LAF P   ++  G+ I + NN   PHNVVFD  + PS   D++K S+S + LL   G+    T       G Y+FYC PH+GAGMVG +TV
Sbjct:   38 QVKLGTDKGLLAFEPKKLTIKPGDTIEWVNNKVPPHNVVFDPAKNPSKNADLAK-SLSHKKLLMSAGQKETTTFAADAPAGDYTFYCEPHRGAGMVGTITV 137          
BLAST of CF836107 vs. ExPASy Swiss-Prot
Match: PLAS_SYNJB (Plastocyanin OS=Synechococcus sp. GN=petE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.055e-13
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = -2
Query:  267 VLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTE--KGTYSFYCSPHQGAGMVGQVTVN 557
            V +G D   L + P S +++ G+ + + NN  +PHNVVF  D++P G       +S + LL  P +       +   G Y++YC+PH+GAGMVG++ VN
Sbjct:   39 VKMGSDKAQLVYDPPSLTINQGDTVQWVNNKVYPHNVVF--DKVPGGDAALAAKLSHKALLTAPKQVVESAFVDVPPGEYTYYCTPHRGAGMVGKIIVN 135          
The following BLAST results are available for this feature:
BLAST of CF836107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PLAS_PROHO8.332e-1642.86Plastocyanin OS=Prochlorothrix hollandica GN=petE ... [more]
PLAS_ANAVT2.424e-1545.00Plastocyanin OS=Anabaena variabilis (strain ATCC 2... [more]
PLAS_ANAVA7.053e-1544.00Plastocyanin OS=Anabaena variabilis GN=petE PE=1 S... [more]
PLAS_ANASP7.053e-1544.00Plastocyanin OS=Anabaena sp. (strain PCC 7120) GN=... [more]
PLAS_ANASO7.053e-1544.00Plastocyanin OS=Anabaena sp. (strain PCC 7119) GN=... [more]
PLAS_NOSP75.971e-1444.55Plastocyanin OS=Nostoc punctiforme (strain ATCC 29... [more]
PLAS_SYNJB5.055e-1336.36Plastocyanin OS=Synechococcus sp. GN=petE PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836107 ID=CF836107; Name=CF836107; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTGAGTGGGTATAGAGTAACTATTCTCATTACTCAA
TGAAAGTCTAATGGGGCACCGATGTCTAAATTAGTTACATCACAAATCTG
CATTTGAAATAAATGGAAAATACAGAGGTTTATTGGCTTGGTTGAAGTGT
CTCACCACATAACATTCTCTCTCACCAAATGAAAATATGTATGATACTCA
TAAAATGCAAAAAGAAGAGAACGATAACCAATGAGATGAGGCAAACAAAG
TCTGAATGTGAACTTAATTAACAGTCACTTGTCCAACCATGCCAGCTCCT
TGGTGAGGGGAACAGTAGAAAGAGTAAGTGCCTTTTTCAGTCAGAGTAAC
AGCATAAGTCTCTCCAGGACCATTGAGAAGGTCTTCTGTAGACATGGAGA
TTTTTGAAACATCAACACCACTCGGAATCTCATCTTCATCGAAAACAACG
TTGTGTGGGAACCCAGCATTGTTCTTGAACACAATCTTTTCACCGGAGCT
GACAGAGAAAGAGCTTGGAACAAAAGCCAAGGACCCATCATCACCACCAA
GCAAAACCTCAATGGCCATGGCATTGCTAGCAAGCATTGCGCTGGCAGCT
GTGGCCGCAACGGCCACTCCAACATCTTTGAGTGTGGCCTTGATGCTGAG
CTTTGGGACAGCAGAGGCTGAGGCCTTCATGGTGGAACCAACAACTCTGG
CTGGTGTTGCACCGGCTTTAAGGCCGGTGAAAGTTGGGACGGTGACAGCT
GCAGAGGTGACAGTAGCCATTGTAACTGTAAATGGGGTTCTGCTGTTTTT
T
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