CF836118

Overview
NameCF836118
Unique NameCF836118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.076e-48
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  180 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 283          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.396e-48
Identity = 88/102 (86.27%), Postives = 97/102 (95.10%), Query Frame = -1
Query:  420 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 725
            VYTVFSATDPKR+ARDSH+PVLAPLPIGF+VFMVHLATIPITGTGINPARSFGAAVIYN +KAWDDQWIFWVGPF+GA +AAFYHQ++LRA A+KA GS RS
Sbjct:  181 VYTVFSATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYGSVRS 282          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.396e-48
Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = -1
Query:  420 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 725
            VYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+KAWD  WIFWVGPF GA +AAFYHQ++LRA AIKALGSFRS
Sbjct:  181 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALGSFRS 282          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.130e-48
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  186 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 288          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.130e-48
Identity = 93/104 (89.42%), Postives = 98/104 (94.23%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  187 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 289          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.130e-48
Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+NK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  180 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLGSFRSAA 283          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.649e-47
Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARS G AVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  186 VYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSYRSNA 288          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.523e-46
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAV+YN  KAW DQWIFWVGPFIGA +AA YHQ +LRA+A +  GSFRSNA
Sbjct:  186 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA-RGYGSFRSNA 288          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.113e-45
Identity = 87/104 (83.65%), Postives = 94/104 (90.38%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YN  KAW DQWIFWVGPFIGA +AA YHQ +LRA+A +  GSFRSNA
Sbjct:  181 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA-RGYGSFRSNA 283          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.899e-45
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS G AV+YN  KAW DQWIFWVGPFIGA +AA YHQ ILRA+A +  GSFRSNA
Sbjct:  184 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA-RGYGSFRSNA 286          
The following BLAST results are available for this feature:
BLAST of CF836118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PIP22_ARATH1.076e-4887.50Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP26_ARATH2.396e-4886.27Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ARATH2.396e-4888.24Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE3.130e-4889.42Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE3.130e-4889.42Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP23_ARATH3.130e-4886.54Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP22_ORYSJ2.649e-4786.54Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE8.523e-4684.62Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ1.113e-4583.65Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP24_ORYSJ1.899e-4584.62Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836118 ID=CF836118; Name=CF836118; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTAGCAACTAAAAAAGGGCATAGTTTTATTCACTATAG
TTGGGGATTAATTAACATTAACAACATAAATACACCACTTGAAATAAAGA
AAAAGGAAAGGATAAGAAAAATATAGAGAAATAGGATATATAAAAAACAC
CACCACCACTTATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCA
AAATCCACCCTTACACATAGATAAAGCATAGGCATAAAATGCATAATGTT
CAAATATCTACAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCC
CTCTAAAGAGCTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTT
GCACTCCTGATCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCA
TATTTAAAGCTTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCT
GCTGCCCTGAGAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAAT
GAATGGTCCAACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGT
TGTAGATCACAGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCG
GTGATGGGGATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGG
GAGTGGTGCCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGAT
CAGTGGCAGAGAAAACAGTGTAGAC
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