CF836118

Overview
NameCF836118
Unique NameCF836118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836118_ssr148 microsatellite CF836118_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:711..1433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.524e-45
Identity = 88/102 (86.27%), Postives = 93/102 (91.18%), Query Frame = -1
Query:  420 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDD WIFWVGPFIGA +AA YHQY+LRA+A K LGS  S
Sbjct:  182 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK-LGSSAS 282          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.321e-43
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = -1
Query:  420 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 725
            VYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN+ KAW D WIFWVGP IGA +AA YHQY+LRA+A K LGS  S
Sbjct:  187 VYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSSSS 287          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.751e-42
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = -1
Query:  414 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 725
            VYTVFSATDPKR+ARDS +PVL PLPIGFAVF+VHLATIPITGTGINPARS GAAV+YN+  AW D WIFWVGP IGAF+AA YH+ +LR  A KAL SFRS +
Sbjct:  184 VYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKALSSFRSTS 287          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.274e-41
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ AWDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  190 VYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.274e-41
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ AWDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  189 VYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKS 284          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.837e-41
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ +WDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  190 VYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKS 285          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.078e-40
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYNK+ AW+D WIFWVGPF+GA +AA YHQ I+RA   K+
Sbjct:  192 VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKS 287          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.839e-40
Identity = 76/96 (79.17%), Postives = 85/96 (88.54%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN+  AWDD WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  191 VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKS 286          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.839e-40
Identity = 76/96 (79.17%), Postives = 86/96 (89.58%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN++ AW+D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  192 VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.402e-40
Identity = 76/96 (79.17%), Postives = 85/96 (88.54%), Query Frame = -1
Query:  438 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 725
            VYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARS GAA+IYN++ AW D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  195 VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 290          
The following BLAST results are available for this feature:
BLAST of CF836118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
PIP25_MAIZE5.524e-4586.27Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_ORYSJ2.321e-4384.31Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ9.751e-4276.92Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP15_ARATH1.274e-4181.25Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.274e-4181.25Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP14_ARATH2.837e-4180.21Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ1.078e-4079.17Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ORYSJ1.839e-4079.17Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_MAIZE1.839e-4079.17Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE2.402e-4079.17Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836118 ID=CF836118; Name=CF836118; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTAGCAACTAAAAAAGGGCATAGTTTTATTCACTATAG
TTGGGGATTAATTAACATTAACAACATAAATACACCACTTGAAATAAAGA
AAAAGGAAAGGATAAGAAAAATATAGAGAAATAGGATATATAAAAAACAC
CACCACCACTTATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCA
AAATCCACCCTTACACATAGATAAAGCATAGGCATAAAATGCATAATGTT
CAAATATCTACAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCC
CTCTAAAGAGCTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTT
GCACTCCTGATCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCA
TATTTAAAGCTTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCT
GCTGCCCTGAGAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAAT
GAATGGTCCAACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGT
TGTAGATCACAGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCG
GTGATGGGGATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGG
GAGTGGTGCCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGAT
CAGTGGCAGAGAAAACAGTGTAGAC
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